From 306237ce98839c89008b5555632ab81f7b454f05 Mon Sep 17 00:00:00 2001
From: Timothy ODonnell <odonnt02@li03c03.chimera.hpc.mssm.edu>
Date: Sun, 22 Dec 2019 10:03:10 -0500
Subject: [PATCH] fix
---
downloads-generation/data_mass_spec_benchmark/GENERATE.sh | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/downloads-generation/data_mass_spec_benchmark/GENERATE.sh b/downloads-generation/data_mass_spec_benchmark/GENERATE.sh
index c7446d11..5710ee0c 100755
--- a/downloads-generation/data_mass_spec_benchmark/GENERATE.sh
+++ b/downloads-generation/data_mass_spec_benchmark/GENERATE.sh
@@ -138,7 +138,7 @@ do
--result-dtype "float16" \
--predictor netmhcpan4-$kind \
--chunk-size 1000 \
- --allele $(cat alleles.txt) \
+ --allele $(cat alleles.txt | grep -v '31:0102') \
--out "$OUT_DIR" \
--worker-log-dir "$SCRATCH_DIR/$DOWNLOAD_NAME" \
--cluster-script-prefix-path $SCRIPT_DIR/cluster_submit_script_header.mssm_hpc.nogpu.lsf \
--
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