From 2ae5b70de2da30153d697c1f03b5433b576c76b3 Mon Sep 17 00:00:00 2001
From: Timothy ODonnell <odonnt02@li03c03.chimera.hpc.mssm.edu>
Date: Tue, 31 Dec 2019 13:45:22 -0500
Subject: [PATCH] fix
---
downloads-generation/models_class1_pan_variants/GENERATE.sh | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/downloads-generation/models_class1_pan_variants/GENERATE.sh b/downloads-generation/models_class1_pan_variants/GENERATE.sh
index 4fe89de6..a59365cc 100755
--- a/downloads-generation/models_class1_pan_variants/GENERATE.sh
+++ b/downloads-generation/models_class1_pan_variants/GENERATE.sh
@@ -87,7 +87,7 @@ do
fi
mhcflurry-class1-train-pan-allele-models \
- --data "$(mhcflurry-downloads path data_curated)/curated_training_data.with_mass_spec.csv.bz2" \
+ --data "$(mhcflurry-downloads path data_curated)/curated_training_data.csv.bz2" \
--allele-sequences "$ALLELE_SEQUENCES" \
--pretrain-data "$(mhcflurry-downloads path random_peptide_predictions)/predictions.csv.bz2" \
--held-out-measurements-per-allele-fraction-and-max 0.25 100 \
--
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