diff --git a/downloads-generation/models_class1_unselected/GENERATE.sh b/downloads-generation/models_class1_unselected/GENERATE.sh index 3a3af72eb8bc6eb67f75aeb0317521272070f76c..124715fae80a1c3a60c85b00713d470058a3625b 100755 --- a/downloads-generation/models_class1_unselected/GENERATE.sh +++ b/downloads-generation/models_class1_unselected/GENERATE.sh @@ -31,13 +31,16 @@ mkdir models python $SCRIPT_DIR/generate_hyperparameters.py > hyperparameters.yaml +GPUS=$(nvidia-smi -L 2> /dev/null | wc -l) || GPUS=0 +echo "Detected GPUS: $GPUS" + time mhcflurry-class1-train-allele-specific-models \ --data "$(mhcflurry-downloads path data_curated)/curated_training_data.no_mass_spec.csv.bz2" \ --hyperparameters hyperparameters.yaml \ --out-models-dir models \ --percent-rank-calibration-num-peptides-per-length 0 \ --min-measurements-per-allele 75 \ - --num-jobs 32 --gpus 4 --backend tensorflow-default + --num-jobs 32 --gpus $GPUS --max-workers-per-gpu 2 cp $SCRIPT_ABSOLUTE_PATH . bzip2 LOG.txt