From 2a7219315bc998996e7269e0b5ec09dc8d7c77d6 Mon Sep 17 00:00:00 2001
From: Tim O'Donnell <timodonnell@gmail.com>
Date: Fri, 13 Mar 2020 13:44:43 -0400
Subject: [PATCH] fix
---
test/test_predict_scan_command.py | 13 +++++++++----
1 file changed, 9 insertions(+), 4 deletions(-)
diff --git a/test/test_predict_scan_command.py b/test/test_predict_scan_command.py
index a945245f..ff69b818 100644
--- a/test/test_predict_scan_command.py
+++ b/test/test_predict_scan_command.py
@@ -17,6 +17,11 @@ setup = startup
from . import data_path
+def read_output_csv(filename):
+ return pandas.read_csv(
+ filename,
+ converters={"n_flank": str, "c_flank": str})
+
def test_fasta():
args = [
@@ -31,7 +36,7 @@ def test_fasta():
full_args = args + ["--out", fd_out.name]
print("Running with args: %s" % full_args)
predict_scan_command.run(full_args)
- result = pandas.read_csv(fd_out.name)
+ result = read_output_csv(fd_out.name)
print(result)
assert not result.isnull().any().any()
finally:
@@ -58,7 +63,7 @@ def test_fasta_50nm():
full_args = args + ["--out", fd_out.name]
print("Running with args: %s" % full_args)
predict_scan_command.run(full_args)
- result = pandas.read_csv(fd_out.name)
+ result = read_output_csv(fd_out.name)
print(result)
assert not result.isnull().any().any()
finally:
@@ -83,7 +88,7 @@ def test_fasta_best():
full_args = args + ["--out", fd_out.name]
print("Running with args: %s" % full_args)
predict_scan_command.run(full_args)
- result = pandas.read_csv(fd_out.name)
+ result = read_output_csv(fd_out.name)
print(result)
assert not result.isnull().any().any()
finally:
@@ -110,7 +115,7 @@ def test_commandline_sequences():
full_args = args + ["--out", fd_out.name]
print("Running with args: %s" % full_args)
predict_scan_command.run(full_args)
- result = pandas.read_csv(fd_out.name)
+ result = read_output_csv(fd_out.name)
print(result)
finally:
for delete in deletes:
--
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