From 219533a05968ca65e66e9d507be46b70cfcb32b2 Mon Sep 17 00:00:00 2001
From: Timothy ODonnell <odonnt02@li03c03.chimera.hpc.mssm.edu>
Date: Sat, 4 Jan 2020 14:10:21 -0500
Subject: [PATCH] tweak chunk size
---
downloads-generation/data_mass_spec_benchmark/GENERATE.sh | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/downloads-generation/data_mass_spec_benchmark/GENERATE.sh b/downloads-generation/data_mass_spec_benchmark/GENERATE.sh
index 3328779e..4b6bf511 100755
--- a/downloads-generation/data_mass_spec_benchmark/GENERATE.sh
+++ b/downloads-generation/data_mass_spec_benchmark/GENERATE.sh
@@ -128,7 +128,7 @@ do
"$(pwd)/proteome_peptides.$subset.csv.bz2" \
--result-dtype "float16" \
--predictor mixmhcpred \
- --chunk-size 500000 \
+ --chunk-size 10000 \
--allele $(cat alleles.txt) \
--out "$OUT_DIR" \
--worker-log-dir "$SCRATCH_DIR/$DOWNLOAD_NAME" \
--
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