From 20e8e51e3350b802eec4d45b2613b98029752d11 Mon Sep 17 00:00:00 2001
From: Tim O'Donnell <timodonnell@gmail.com>
Date: Sun, 19 Feb 2017 14:37:39 -0500
Subject: [PATCH] small fixes
---
mhcflurry/antigen_presentation/__init__.py | 3 ++-
.../presentation_component_models/expression.py | 2 +-
.../fixed_affinity_predictions.py | 3 +++
3 files changed, 6 insertions(+), 2 deletions(-)
diff --git a/mhcflurry/antigen_presentation/__init__.py b/mhcflurry/antigen_presentation/__init__.py
index 0b544c71..7406a57d 100644
--- a/mhcflurry/antigen_presentation/__init__.py
+++ b/mhcflurry/antigen_presentation/__init__.py
@@ -1,9 +1,10 @@
-from .presentation_model import PresentationModel
+from .presentation_model import PresentationModel, build_presentation_models
from .percent_rank_transform import PercentRankTransform
from . import presentation_component_models, decoy_strategies
__all__ = [
"PresentationModel",
+ "build_presentation_models",
"PercentRankTransform",
"presentation_component_models",
"decoy_strategies",
diff --git a/mhcflurry/antigen_presentation/presentation_component_models/expression.py b/mhcflurry/antigen_presentation/presentation_component_models/expression.py
index 0c4b516a..22e1abb0 100644
--- a/mhcflurry/antigen_presentation/presentation_component_models/expression.py
+++ b/mhcflurry/antigen_presentation/presentation_component_models/expression.py
@@ -25,7 +25,7 @@ class Expression(PresentationComponentModel):
group in expression_values.columns
for group in experiment_to_expression_group.values())
- assert_no_null(experiment_to_expression_group)
+ assert_no_null(expression_values)
self.experiment_to_expression_group = experiment_to_expression_group
self.expression_values = expression_values
diff --git a/mhcflurry/antigen_presentation/presentation_component_models/fixed_affinity_predictions.py b/mhcflurry/antigen_presentation/presentation_component_models/fixed_affinity_predictions.py
index 3a4a29b1..0680dde4 100644
--- a/mhcflurry/antigen_presentation/presentation_component_models/fixed_affinity_predictions.py
+++ b/mhcflurry/antigen_presentation/presentation_component_models/fixed_affinity_predictions.py
@@ -16,6 +16,9 @@ class FixedAffinityPredictions(PresentationComponentModel):
- "value", "percentile_rank" (IC50 and percent rank)
- peptide (string)
- allele (string)
+
+ name : string
+ Used to name output columns and in debug messages
"""
def __init__(
--
GitLab