diff --git a/downloads-generation/cross_validation_class1/GENERATE.sh b/downloads-generation/cross_validation_class1/GENERATE.sh index ebbe0b8e5a079610e168557e03e629ba0a667e51..658460f6f43ba4cd0a132710f44c8fa240b6d450 100755 --- a/downloads-generation/cross_validation_class1/GENERATE.sh +++ b/downloads-generation/cross_validation_class1/GENERATE.sh @@ -31,7 +31,7 @@ cp $SCRIPT_DIR/score.py . time python split_folds.py \ "$(mhcflurry-downloads path data_curated)/curated_training_data.csv.bz2" \ - --min-measurements-per-allele 100 \ + --min-measurements-per-allele 75 \ --folds $NFOLDS \ --random-state 1 \ --output-pattern-test "./test.fold_{}.csv" \ diff --git a/downloads-generation/models_class1/GENERATE.sh b/downloads-generation/models_class1/GENERATE.sh index 68a1db108ccfd4cb4d16595ea12cc283c07e0ca1..2e509d2385196e8b95ff831425d3b52d3aa09814 100755 --- a/downloads-generation/models_class1/GENERATE.sh +++ b/downloads-generation/models_class1/GENERATE.sh @@ -32,7 +32,7 @@ time mhcflurry-class1-train-allele-specific-models \ --hyperparameters hyperparameters.yaml \ --out-models-dir models \ --percent-rank-calibration-num-peptides-per-length 1000000 \ - --min-measurements-per-allele 100 + --min-measurements-per-allele 75 cp $SCRIPT_ABSOLUTE_PATH . bzip2 LOG.txt