diff --git a/downloads-generation/models_class1_unselected/GENERATE.sh b/downloads-generation/models_class1_unselected/GENERATE.sh index f9f3545cf868663076704c739a848239703c5389..a3cdb5c0fa5e36e88407e1caacc5b22bb2c0f042 100755 --- a/downloads-generation/models_class1_unselected/GENERATE.sh +++ b/downloads-generation/models_class1_unselected/GENERATE.sh @@ -38,7 +38,6 @@ PROCESSORS=$(getconf _NPROCESSORS_ONLN) echo "Detected processors: $PROCESSORS" time mhcflurry-class1-train-allele-specific-models \ - --allele HLA-A*02:01 HLA-A*01:01 HLA-A*03:01 HLA-A*11:01 HLA-A*24:02 HLA-B*07:02 HLA-B*15:01 \ --data "$(mhcflurry-downloads path data_curated)/curated_training_data.no_mass_spec.csv.bz2" \ --hyperparameters hyperparameters.yaml \ --out-models-dir models \ diff --git a/mhcflurry/class1_neural_network.py b/mhcflurry/class1_neural_network.py index 4bc8331b165bbee85ddc4c3272659fdf25bab1c3..9b2841227b95855dfdec328fd26a9376a58df19e 100644 --- a/mhcflurry/class1_neural_network.py +++ b/mhcflurry/class1_neural_network.py @@ -103,7 +103,7 @@ class Class1NeuralNetwork(object): """ miscelaneous_hyperparameter_defaults = HyperparameterDefaults( - train_data={'subset': 'all', 'num_poitns': None}, + train_data={'subset': 'all'}, ) """ Miscelaneous hyperaparameters. These parameters are not used by this class