diff --git a/downloads-generation/data_mass_spec_annotated/GENERATE.sh b/downloads-generation/data_mass_spec_annotated/GENERATE.sh index e9c523812369e5a2329e7ac5fe5026dcaa6b71aa..f62c2f5980580fe50e1ac9a28d078a51fef6c5de 100755 --- a/downloads-generation/data_mass_spec_annotated/GENERATE.sh +++ b/downloads-generation/data_mass_spec_annotated/GENERATE.sh @@ -27,7 +27,7 @@ cd $SCRATCH_DIR/$DOWNLOAD_NAME cp $SCRIPT_DIR/annotate.py . -PEPTIDES=$(mhcflurry-downloads path data_curated)/ms.nontraining_curated.by_pmid.csv.bz2 +PEPTIDES=$(mhcflurry-downloads path data_curated)/ms.by_pmid.csv.bz2 REFERENCES_DIR=$(mhcflurry-downloads path data_references) python annotate.py \