diff --git a/Sorted_Files/adhesion_scores_sorted.csv b/Sorted_Files/adhesion_scores_sorted.csv new file mode 100644 index 0000000000000000000000000000000000000000..2c46c7855caffa202ab7e187cedbbbdcf2cc491d --- /dev/null +++ b/Sorted_Files/adhesion_scores_sorted.csv @@ -0,0 +1,205 @@ +MAY Strain #,Species,Soll Clade,Isolation Site, MTL Genotype, Media,Temperature(°C),MJD Phenotype Score,MJD Score St. Dev.,RJF Phenotype Score,RJF Score St. Dev.,Total Average Phenotype Score,Total Phenotype Score St. Dev. +12C,Candida albicans,I,Oral cavity,a/a,SPI,30,0.03713,0.03013,0.15927,0.0677,0.0982,0.08047 +12C,Candida albicans,I,Oral cavity,a/a,LEE,30,0.40436,0.05654,0.32061,0.08573,0.36248,0.08383 +12C,Candida albicans,I,Oral cavity,a/a,YPD,37,0.36551,0.10623,0.5587,0.02997,0.48142,0.11837 +12C,Candida albicans,I,Oral cavity,a/a,YPD,30,0.39405,0.04549,0.56385,0.08526,0.47895,0.10898 +12C,Candida albicans,I,Oral cavity,a/a,SPI,37,0.16356,0.08142,0.17102,0.04669,0.16729,0.06647 +12C,Candida albicans,I,Oral cavity,a/a,LEE,37,0.25164,0.11526,0.1191,0.06192,0.18537,0.1138 +19F,Candida albicans,I,Vagina,α/α,LEE,37,0.22801,0.12081,0.12552,0.10411,0.17677,0.12387 +19F,Candida albicans,I,Vagina,α/α,SPI,30,0.1376,0.10131,0.07287,0.01717,0.10524,0.07954 +19F,Candida albicans,I,Vagina,α/α,SPI,37,0.14409,0.07049,0.06683,0.05303,0.10546,0.07337 +19F,Candida albicans,I,Vagina,α/α,LEE,30,0.15948,0.05864,0.24497,0.06442,0.20222,0.07498 +19F,Candida albicans,I,Vagina,α/α,YPD,30,0.46491,0.11488,0.48053,0.09357,0.47272,0.10506 +19F,Candida albicans,I,Vagina,α/α,YPD,37,0.43244,0.03875,0.60468,0.09646,0.51856,0.11322 +529L,Candida albicans,529L,Oral cavity,a/α,SPI,30,0.2137,0.09117,0.11156,0.02141,0.16263,0.08362 +529L,Candida albicans,529L,Oral cavity,a/α,YPD,37,0.78417,0.17975,0.65753,0.12574,0.72085,0.16754 +529L,Candida albicans,529L,Oral cavity,a/α,YPD,30,0.61432,0.0298,0.66708,0.08144,0.6407,0.06675 +529L,Candida albicans,529L,Oral cavity,a/α,LEE,30,0.1274,0.01752,0.15739,0.04949,0.14239,0.04004 +529L,Candida albicans,529L,Oral cavity,a/α,SPI,37,0.11518,0.02917,0.02711,0.0122,0.07115,0.04939 +529L,Candida albicans,529L,Oral cavity,a/α,LEE,37,0.32246,0.028,0.37487,0.05085,0.34866,0.0487 +C. dubliniensis,Candida dubliniensis,Unassigned,Unknown,Unknown,LEE,30,0.1106,0.07098,0.17762,0.08898,0.14411,0.08718 +C. dubliniensis,Candida dubliniensis,Unassigned,Unknown,Unknown,SPI,30,0.1166,0.06431,0.1276,0.09723,0.1221,0.08261 +C. dubliniensis,Candida dubliniensis,Unassigned,Unknown,Unknown,LEE,37,0.363,0.22484,0.87454,0.05444,0.61877,0.3036 +C. dubliniensis,Candida dubliniensis,Unassigned,Unknown,Unknown,YPD,37,0.58867,0.06289,0.51675,0.16144,0.55271,0.12768 +C. dubliniensis,Candida dubliniensis,Unassigned,Unknown,Unknown,SPI,37,0.38167,0.1163,0.49621,0.13588,0.43894,0.13883 +C. dubliniensis,Candida dubliniensis,Unassigned,Unknown,Unknown,YPD,30,0.64324,0.13186,0.57842,0.12185,0.61083,0.13103 +C. glabrata,Candida glabrata,Unassigned,Unknown,Unknown,LEE,30,0.0,0.0,0.0,0.0,0.0,0.0 +C. glabrata,Candida glabrata,Unassigned,Unknown,Unknown,LEE,37,0.0,0.0,0.33333,0.4714,0.16667,0.37268 +C. glabrata,Candida glabrata,Unassigned,Unknown,Unknown,SPI,30,0.0,0.0,0.0,0.0,0.0,0.0 +C. glabrata,Candida glabrata,Unassigned,Unknown,Unknown,YPD,37,0.96132,0.0547,0.97119,0.04074,0.96626,0.04848 +C. glabrata,Candida glabrata,Unassigned,Unknown,Unknown,SPI,37,0.5,0.5,0.0,0.0,0.25,0.43301 +C. glabrata,Candida glabrata,Unassigned,Unknown,Unknown,YPD,30,0.95232,0.06742,1.0,0.0,0.97616,0.0533 +C. guilliermondii,Candida guilliermondii,Unassigned,Unknown,Unknown,LEE,37,0.53917,0.24154,0.54145,0.32472,0.54031,0.28617 +C. guilliermondii,Candida guilliermondii,Unassigned,Unknown,Unknown,LEE,30,0.73122,0.06332,0.65236,0.08344,0.69179,0.08391 +C. guilliermondii,Candida guilliermondii,Unassigned,Unknown,Unknown,SPI,37,0.70275,0.11313,0.69341,0.21885,0.69808,0.17427 +C. guilliermondii,Candida guilliermondii,Unassigned,Unknown,Unknown,SPI,30,0.47599,0.13493,0.54959,0.10899,0.51279,0.12805 +C. guilliermondii,Candida guilliermondii,Unassigned,Unknown,Unknown,YPD,37,1.0,0.0,0.82855,0.20983,0.91427,0.17135 +C. guilliermondii,Candida guilliermondii,Unassigned,Unknown,Unknown,YPD,30,0.92941,0.09983,0.84609,0.02798,0.88775,0.08432 +C. lusitaniae,Candida lusitaniae,Unassigned,Unknown,Unknown,SPI,30,0.17364,0.07044,0.15556,0.10596,0.1646,0.09042 +C. lusitaniae,Candida lusitaniae,Unassigned,Unknown,Unknown,YPD,30,0.6432,0.06083,0.62029,0.11787,0.63175,0.09449 +C. lusitaniae,Candida lusitaniae,Unassigned,Unknown,Unknown,SPI,37,0.09144,0.02681,0.03548,0.00773,0.06346,0.03424 +C. lusitaniae,Candida lusitaniae,Unassigned,Unknown,Unknown,YPD,37,0.52271,0.0704,0.58121,0.18419,0.55196,0.14246 +C. lusitaniae,Candida lusitaniae,Unassigned,Unknown,Unknown,LEE,37,0.0,0.0,0.21569,0.30503,0.10784,0.24114 +C. lusitaniae,Candida lusitaniae,Unassigned,Unknown,Unknown,LEE,30,0.0,0.0,0.00612,0.00865,0.00306,0.00684 +C. metapsilosis,Candida metapsilosis,Unassigned,Unknown,Unknown,SPI,37,0.20447,0.09598,0.19584,0.05468,0.20015,0.07823 +C. metapsilosis,Candida metapsilosis,Unassigned,Unknown,Unknown,YPD,37,0.78877,0.1148,0.82058,0.04438,0.80468,0.08847 +C. metapsilosis,Candida metapsilosis,Unassigned,Unknown,Unknown,YPD,30,0.71741,0.1461,0.78816,0.1207,0.75278,0.13859 +C. metapsilosis,Candida metapsilosis,Unassigned,Unknown,Unknown,LEE,37,0.39021,0.18145,0.66317,0.14073,0.52669,0.21211 +C. metapsilosis,Candida metapsilosis,Unassigned,Unknown,Unknown,LEE,30,0.53846,0.10953,0.8349,0.05896,0.68668,0.17235 +C. metapsilosis,Candida metapsilosis,Unassigned,Unknown,Unknown,SPI,30,0.1717,0.0902,0.11113,0.02386,0.14142,0.07259 +C. orthopsilosis,Candida orthopsilosis,Unassigned,Unknown,Unknown,YPD,30,0.73248,0.13058,0.6851,0.05631,0.70879,0.10331 +C. orthopsilosis,Candida orthopsilosis,Unassigned,Unknown,Unknown,SPI,37,0.28079,0.0416,0.24916,0.05013,0.26498,0.0487 +C. orthopsilosis,Candida orthopsilosis,Unassigned,Unknown,Unknown,LEE,37,0.24526,0.14999,0.25426,0.09412,0.24976,0.12529 +C. orthopsilosis,Candida orthopsilosis,Unassigned,Unknown,Unknown,LEE,30,0.18359,0.04182,0.18709,0.073,0.18534,0.05951 +C. orthopsilosis,Candida orthopsilosis,Unassigned,Unknown,Unknown,SPI,30,0.25836,0.04938,0.28,0.13417,0.26918,0.10167 +C. orthopsilosis,Candida orthopsilosis,Unassigned,Unknown,Unknown,YPD,37,0.81214,0.09229,0.67462,0.10544,0.74338,0.1206 +C. parapsilosis,Candida parapsilosis,Unassigned,Unknown,Unknown,YPD,30,1.0,0.0,1.0,0.0,1.0,0.0 +C. parapsilosis,Candida parapsilosis,Unassigned,Unknown,Unknown,SPI,30,0.18945,0.04981,0.1377,0.0693,0.16357,0.06566 +C. parapsilosis,Candida parapsilosis,Unassigned,Unknown,Unknown,LEE,37,0.72724,0.26036,0.74607,0.2246,0.73666,0.24332 +C. parapsilosis,Candida parapsilosis,Unassigned,Unknown,Unknown,YPD,37,0.97022,0.04212,0.83238,0.19265,0.9013,0.15554 +C. parapsilosis,Candida parapsilosis,Unassigned,Unknown,Unknown,LEE,30,0.88895,0.14188,0.95878,0.05363,0.92387,0.11279 +C. parapsilosis,Candida parapsilosis,Unassigned,Unknown,Unknown,SPI,37,0.53441,0.15259,0.50175,0.25047,0.51808,0.20803 +C. tropicalis,Candida tropicalis,Unassigned,Unknown,Unknown,SPI,30,0.81682,0.14696,0.92791,0.07875,0.87237,0.13032 +C. tropicalis,Candida tropicalis,Unassigned,Unknown,Unknown,SPI,37,0.91357,0.06772,0.92002,0.1131,0.9168,0.09327 +C. tropicalis,Candida tropicalis,Unassigned,Unknown,Unknown,LEE,30,0.21085,0.15241,0.4305,0.27671,0.32067,0.24892 +C. tropicalis,Candida tropicalis,Unassigned,Unknown,Unknown,YPD,30,0.72154,0.12364,0.73524,0.1245,0.72839,0.12426 +C. tropicalis,Candida tropicalis,Unassigned,Unknown,Unknown,YPD,37,0.96142,0.032,0.88913,0.08039,0.92527,0.07106 +C. tropicalis,Candida tropicalis,Unassigned,Unknown,Unknown,LEE,37,0.53362,0.1294,0.44662,0.20681,0.49012,0.1779 +D. hansenii,Debaryomyces hansenii,Unassigned,Unknown,Unknown,SPI,30,0.32103,0.12337,0.11784,0.04957,0.21943,0.13842 +D. hansenii,Debaryomyces hansenii,Unassigned,Unknown,Unknown,LEE,30,0.04362,0.05098,0.02173,0.02942,0.03268,0.04303 +D. hansenii,Debaryomyces hansenii,Unassigned,Unknown,Unknown,YPD,30,0.69613,0.01115,0.80939,0.10728,0.75276,0.09499 +D. hansenii,Debaryomyces hansenii,Unassigned,Unknown,Unknown,SPI,37,0.0,0.0,0.0,0.0,0.0,0.0 +D. hansenii,Debaryomyces hansenii,Unassigned,Unknown,Unknown,YPD,37,0.0,0.0,-,-,0.0,0.0 +D. hansenii,Debaryomyces hansenii,Unassigned,Unknown,Unknown,LEE,37,0.0,0.0,0.0,0.0,0.0,0.0 +GC75,Candida albicans,SA,Oral cavity,a/α,YPD,30,0.50564,0.08554,0.62897,0.09409,0.56731,0.10903 +GC75,Candida albicans,SA,Oral cavity,a/α,LEE,37,0.10527,0.00646,0.03499,0.00405,0.07013,0.03555 +GC75,Candida albicans,SA,Oral cavity,a/α,SPI,30,0.04399,0.02055,0.13808,0.04951,0.09103,0.06041 +GC75,Candida albicans,SA,Oral cavity,a/α,LEE,30,0.31109,0.08324,0.24456,0.04805,0.27783,0.07567 +GC75,Candida albicans,SA,Oral cavity,a/α,YPD,37,0.46326,0.07061,0.51721,0.08596,0.49024,0.08315 +GC75,Candida albicans,SA,Oral cavity,a/α,SPI,37,0.13688,0.03178,0.0628,0.01808,0.09984,0.04517 +L. elongisporus,Lodderomyces elongisporus,Unassigned,Unknown,Unknown,YPD,30,0.70312,0.06585,0.91837,0.07486,0.81075,0.12866 +L. elongisporus,Lodderomyces elongisporus,Unassigned,Unknown,Unknown,SPI,37,0.10941,0.07339,0.08504,0.06251,0.09722,0.06924 +L. elongisporus,Lodderomyces elongisporus,Unassigned,Unknown,Unknown,SPI,30,0.38834,0.0919,0.37605,0.01001,0.3822,0.06565 +L. elongisporus,Lodderomyces elongisporus,Unassigned,Unknown,Unknown,YPD,37,0.76608,0.13441,0.7632,0.09497,0.76464,0.11638 +L. elongisporus,Lodderomyces elongisporus,Unassigned,Unknown,Unknown,LEE,37,0.22106,0.19965,0.04061,0.01114,0.13083,0.16773 +L. elongisporus,Lodderomyces elongisporus,Unassigned,Unknown,Unknown,LEE,30,0.04232,0.01668,0.04982,0.05383,0.04607,0.04003 +L26,Candida albicans,I,Vagina,a/a,YPD,37,0.50838,0.06669,0.63416,0.10398,0.57127,0.10763 +L26,Candida albicans,I,Vagina,a/a,SPI,37,0.00753,0.0075,0.00427,0.0029,0.00557,0.00548 +L26,Candida albicans,I,Vagina,a/a,LEE,37,0.06624,0.0356,0.09794,0.07738,0.08209,0.06228 +L26,Candida albicans,I,Vagina,a/a,SPI,30,0.06118,0.0323,0.04371,0.0123,0.05245,0.02595 +L26,Candida albicans,I,Vagina,a/a,YPD,30,0.59612,0.10421,0.55963,0.10643,0.57788,0.10689 +L26,Candida albicans,I,Vagina,a/a,LEE,30,0.11858,0.02737,0.19708,0.02142,0.15783,0.04631 +P34048,Candida albicans,III,Bloodstream,a/α,LEE,37,0.23132,0.05614,0.06809,0.02142,0.1497,0.09202 +P34048,Candida albicans,III,Bloodstream,a/α,SPI,30,0.07587,0.05797,0.11829,0.06029,0.09708,0.06283 +P34048,Candida albicans,III,Bloodstream,a/α,SPI,37,0.16561,0.08857,0.08871,0.06018,0.12716,0.08492 +P34048,Candida albicans,III,Bloodstream,a/α,YPD,37,0.50186,0.17053,0.63349,0.14099,0.57366,0.16839 +P34048,Candida albicans,III,Bloodstream,a/α,YPD,30,0.65115,0.19124,0.54811,0.15243,0.59963,0.18044 +P34048,Candida albicans,III,Bloodstream,a/α,LEE,30,0.26181,0.07878,0.15512,0.07884,0.20847,0.09517 +P37005,Candida albicans,I,Oral cavity,a/a,LEE,37,0.12591,0.02525,0.03691,0.02207,0.08141,0.05043 +P37005,Candida albicans,I,Oral cavity,a/a,LEE,30,0.08135,0.02328,0.24382,0.09556,0.16258,0.10694 +P37005,Candida albicans,I,Oral cavity,a/a,YPD,30,0.70757,0.21187,0.88699,0.11268,0.79728,0.19194 +P37005,Candida albicans,I,Oral cavity,a/a,YPD,37,0.51884,0.04168,0.50801,0.02032,0.51342,0.03323 +P37005,Candida albicans,I,Oral cavity,a/a,SPI,30,0.10218,0.07352,0.0792,0.05128,0.09069,0.06442 +P37005,Candida albicans,I,Oral cavity,a/a,SPI,37,0.00339,0.00277,0.02131,0.00775,0.01414,0.01078 +P37037,Candida albicans,I,Oral cavity,a/α,SPI,30,0.10666,0.05126,0.21475,0.14279,0.1607,0.12012 +P37037,Candida albicans,I,Oral cavity,a/α,YPD,30,0.79183,0.22266,0.68098,0.15271,0.73641,0.1988 +P37037,Candida albicans,I,Oral cavity,a/α,LEE,30,0.3105,0.08328,0.23153,0.09308,0.27102,0.09674 +P37037,Candida albicans,I,Oral cavity,a/α,YPD,37,0.4938,0.12506,0.52802,0.15591,0.51091,0.14236 +P37037,Candida albicans,I,Oral cavity,a/α,LEE,37,0.64167,0.27566,0.43363,0.20496,0.53765,0.26423 +P37037,Candida albicans,I,Oral cavity,a/α,SPI,37,0.03031,0.01226,0.06998,0.04102,0.05014,0.03619 +P37039,Candida albicans,I,Bloodstream,a/α,SPI,30,0.23123,0.12379,0.18296,0.07651,0.2071,0.10569 +P37039,Candida albicans,I,Bloodstream,a/α,SPI,37,0.08762,0.05006,0.06852,0.02908,0.07807,0.04203 +P37039,Candida albicans,I,Bloodstream,a/α,LEE,37,0.10193,0.04626,0.05361,0.02397,0.07777,0.04405 +P37039,Candida albicans,I,Bloodstream,a/α,LEE,30,0.16264,0.04631,0.1451,0.0605,0.15387,0.05458 +P37039,Candida albicans,I,Bloodstream,a/α,YPD,37,0.40261,0.11039,0.40341,0.07045,0.40301,0.0926 +P37039,Candida albicans,I,Bloodstream,a/α,YPD,30,0.55325,0.13944,0.55712,0.12697,0.55519,0.13336 +P57055,Candida albicans,III,Bloodstream,a/α,SPI,37,0.1018,0.10917,0.10321,0.05984,0.1025,0.08804 +P57055,Candida albicans,III,Bloodstream,a/α,YPD,30,0.52573,0.08604,0.49517,0.10916,0.51045,0.09946 +P57055,Candida albicans,III,Bloodstream,a/α,SPI,30,0.09138,0.07086,0.09668,0.03768,0.09403,0.05681 +P57055,Candida albicans,III,Bloodstream,a/α,YPD,37,0.44092,0.08319,0.47094,0.03778,0.45593,0.06632 +P57055,Candida albicans,III,Bloodstream,a/α,LEE,37,0.04006,0.02071,0.09068,0.04648,0.06537,0.04399 +P57055,Candida albicans,III,Bloodstream,a/α,LEE,30,0.10856,0.03489,0.21571,0.08742,0.16213,0.08544 +P57072,Candida albicans,II,Bloodstream,α/α,SPI,37,0.06999,0.10789,0.00236,0.0023,0.03617,0.08346 +P57072,Candida albicans,II,Bloodstream,α/α,SPI,30,0.31698,0.29241,0.08156,0.0525,0.19927,0.2408 +P57072,Candida albicans,II,Bloodstream,α/α,LEE,30,0.2575,0.07505,0.44473,0.31395,0.35111,0.24671 +P57072,Candida albicans,II,Bloodstream,α/α,YPD,30,0.6314,0.11966,0.58915,0.17981,0.61028,0.15418 +P57072,Candida albicans,II,Bloodstream,α/α,LEE,37,0.15329,0.06512,0.15873,0.10503,0.15601,0.08742 +P57072,Candida albicans,II,Bloodstream,α/α,YPD,37,0.47157,0.135,0.52886,0.18005,0.50022,0.16169 +P60002,Candida albicans,SA,Bloodstream,a/a,YPD,30,0.47863,0.04573,0.5838,0.02883,0.53121,0.06501 +P60002,Candida albicans,SA,Bloodstream,a/a,YPD,37,0.54455,0.22942,0.51176,0.10306,0.52816,0.1786 +P60002,Candida albicans,SA,Bloodstream,a/a,SPI,30,0.20847,0.0641,0.02556,0.00252,0.11701,0.10209 +P60002,Candida albicans,SA,Bloodstream,a/a,LEE,37,0.13993,0.05973,0.07499,0.03658,0.10746,0.05922 +P60002,Candida albicans,SA,Bloodstream,a/a,SPI,37,0.33427,0.343,0.31403,0.21948,0.32415,0.28812 +P60002,Candida albicans,SA,Bloodstream,a/a,LEE,30,0.18884,0.07321,0.20839,0.05588,0.19862,0.06585 +P75010,Candida albicans,E,Bloodstream,a/α,SPI,30,0.15561,0.12283,0.19498,0.13731,0.1753,0.13175 +P75010,Candida albicans,E,Bloodstream,a/α,LEE,30,0.17602,0.07286,0.20442,0.08652,0.19022,0.08123 +P75010,Candida albicans,E,Bloodstream,a/α,LEE,37,0.10765,0.05497,0.05846,0.0471,0.08306,0.05679 +P75010,Candida albicans,E,Bloodstream,a/α,YPD,30,0.47489,0.13595,0.50155,0.0844,0.48822,0.11393 +P75010,Candida albicans,E,Bloodstream,a/α,SPI,37,0.11189,0.08451,0.13228,0.05773,0.12209,0.07309 +P75010,Candida albicans,E,Bloodstream,a/α,YPD,37,0.44623,0.12472,0.51861,0.18453,0.48242,0.1616 +P75016,Candida albicans,SA,Bloodstream,a/α,LEE,30,0.20169,0.07452,0.28724,0.09075,0.24446,0.0934 +P75016,Candida albicans,SA,Bloodstream,a/α,YPD,30,0.48031,0.11021,0.56073,0.10101,0.52052,0.1131 +P75016,Candida albicans,SA,Bloodstream,a/α,YPD,37,0.52239,0.13155,0.45116,0.07877,0.48678,0.11412 +P75016,Candida albicans,SA,Bloodstream,a/α,SPI,37,0.16396,0.09244,0.10888,0.07948,0.13642,0.0905 +P75016,Candida albicans,SA,Bloodstream,a/α,LEE,37,0.06247,0.02983,0.09085,0.04115,0.07666,0.03864 +P75016,Candida albicans,SA,Bloodstream,a/α,SPI,30,0.20962,0.07886,0.18925,0.05945,0.19944,0.07057 +P75063,Candida albicans,SA,Bloodstream,α/-,YPD,37,0.3455,0.07704,0.48618,0.11849,0.41584,0.12221 +P75063,Candida albicans,SA,Bloodstream,α/-,YPD,30,0.51937,0.13251,0.72099,0.07673,0.62018,0.14794 +P75063,Candida albicans,SA,Bloodstream,α/-,SPI,37,0.06425,0.01249,0.05389,0.05717,0.05907,0.0417 +P75063,Candida albicans,SA,Bloodstream,α/-,LEE,37,0.16472,0.06514,0.08328,0.03977,0.124,0.0676 +P75063,Candida albicans,SA,Bloodstream,α/-,SPI,30,0.03226,0.01597,0.12031,0.02159,0.07629,0.04794 +P75063,Candida albicans,SA,Bloodstream,α/-,LEE,30,0.23349,0.02271,0.1584,0.01762,0.19594,0.04269 +P76055,Candida albicans,II,Bloodstream,a/α,YPD,30,0.24004,0.05309,0.696,0.15599,0.46802,0.25603 +P76055,Candida albicans,II,Bloodstream,a/α,LEE,30,0.32406,0.03246,0.37088,0.123,0.34747,0.09295 +P76055,Candida albicans,II,Bloodstream,a/α,SPI,37,0.02649,0.01886,0.07213,0.03876,0.05388,0.03929 +P76055,Candida albicans,II,Bloodstream,a/α,SPI,30,0.06731,0.05024,0.13541,0.05233,0.10136,0.06157 +P76055,Candida albicans,II,Bloodstream,a/α,LEE,37,0.14465,0.04937,0.05299,0.00119,0.09882,0.05762 +P76055,Candida albicans,II,Bloodstream,a/α,YPD,37,0.29302,0.04316,0.48757,0.16887,0.39029,0.15701 +P76067,Candida albicans,II,Bloodstream,a/α,SPI,30,0.76981,0.26568,0.43608,0.28171,0.58777,0.32092 +P76067,Candida albicans,II,Bloodstream,a/α,YPD,37,0.45448,0.11775,0.45207,0.06482,0.45328,0.09506 +P76067,Candida albicans,II,Bloodstream,a/α,LEE,37,0.04013,0.03626,0.05182,0.04795,0.04597,0.04291 +P76067,Candida albicans,II,Bloodstream,a/α,SPI,37,0.18256,0.12145,0.13611,0.13072,0.15934,0.12829 +P76067,Candida albicans,II,Bloodstream,a/α,LEE,30,0.07391,0.06126,0.09194,0.07791,0.0821,0.06991 +P76067,Candida albicans,II,Bloodstream,a/α,YPD,30,0.48709,0.06416,0.50157,0.10367,0.49499,0.08823 +P78042,Candida albicans,III,Bloodstream,a/α,SPI,30,0.24403,0.12318,0.07548,0.0362,0.15975,0.12387 +P78042,Candida albicans,III,Bloodstream,a/α,LEE,37,0.09,0.03182,0.0812,0.02335,0.0856,0.02825 +P78042,Candida albicans,III,Bloodstream,a/α,LEE,30,0.15916,0.0304,0.26966,0.1231,0.21441,0.10532 +P78042,Candida albicans,III,Bloodstream,a/α,YPD,37,0.37452,0.08104,0.543,0.1719,0.45876,0.1586 +P78042,Candida albicans,III,Bloodstream,a/α,YPD,30,0.51096,0.05616,0.45124,0.12315,0.4811,0.10026 +P78042,Candida albicans,III,Bloodstream,a/α,SPI,37,0.06098,0.02017,0.12882,0.12385,0.0949,0.09499 +P78048,Candida albicans,I,Bloodstream,α/α,LEE,30,0.2034,0.0736,0.15831,0.04921,0.18085,0.06654 +P78048,Candida albicans,I,Bloodstream,α/α,YPD,37,0.47471,0.09132,0.63763,0.15857,0.55617,0.1529 +P78048,Candida albicans,I,Bloodstream,α/α,SPI,30,0.09296,0.05803,0.23065,0.16411,0.16181,0.14103 +P78048,Candida albicans,I,Bloodstream,α/α,SPI,37,0.08774,0.11834,0.11535,0.0612,0.10154,0.09521 +P78048,Candida albicans,I,Bloodstream,α/α,YPD,30,0.56296,0.15388,0.56255,0.10673,0.56276,0.13242 +P78048,Candida albicans,I,Bloodstream,α/α,LEE,37,0.25647,0.21209,0.19529,0.2114,0.22588,0.21394 +P87,Candida albicans,SA,Oral cavity,a/a,YPD,37,0.51085,0.12898,0.46492,0.20497,0.48788,0.17278 +P87,Candida albicans,SA,Oral cavity,a/a,SPI,37,0.50462,0.36976,0.25544,0.19731,0.38003,0.32148 +P87,Candida albicans,SA,Oral cavity,a/a,LEE,30,0.25116,0.11163,0.14601,0.04573,0.19858,0.1002 +P87,Candida albicans,SA,Oral cavity,a/a,YPD,30,0.54269,0.17894,0.61894,0.10128,0.58081,0.15031 +P87,Candida albicans,SA,Oral cavity,a/a,SPI,30,0.09186,0.08274,0.07591,0.02051,0.08316,0.05835 +P87,Candida albicans,SA,Oral cavity,a/a,LEE,37,0.09922,0.02733,0.2285,0.20024,0.16386,0.15684 +P94015,Candida albicans,I,Bloodstream,a/a,SPI,30,0.51867,0.36484,0.42939,0.20735,0.47403,0.30007 +P94015,Candida albicans,I,Bloodstream,a/a,YPD,30,0.77746,0.16655,0.93399,0.10599,0.85573,0.16004 +P94015,Candida albicans,I,Bloodstream,a/a,LEE,37,0.84961,0.19931,0.9488,0.0882,0.89921,0.1619 +P94015,Candida albicans,I,Bloodstream,a/a,LEE,30,0.80052,0.24837,0.87906,0.13587,0.83979,0.204 +P94015,Candida albicans,I,Bloodstream,a/a,YPD,37,0.82542,0.1505,0.90916,0.09297,0.8711,0.12942 +P94015,Candida albicans,I,Bloodstream,a/a,SPI,37,0.4998,0.11333,0.22974,0.12861,0.36477,0.18145 +SC5314,Candida albicans,I,Bloodstream,a/α,YPD,30,0.41339,0.02825,0.64693,0.03716,0.50681,0.11883 +SC5314,Candida albicans,I,Bloodstream,a/α,LEE,30,0.17586,0.12293,0.39536,0.06949,0.28561,0.14838 +SC5314,Candida albicans,I,Bloodstream,a/α,SPI,30,0.90286,0.07192,0.52658,0.05493,0.71472,0.19872 +SC5314,Candida albicans,I,Bloodstream,a/α,SPI,37,1.0,0.0,0.8339,0.1185,0.91695,0.11797 +SC5314,Candida albicans,I,Bloodstream,a/α,YPD,37,0.23814,0.19592,0.73597,0.13796,0.48706,0.30111 +SC5314,Candida albicans,I,Bloodstream,a/α,LEE,37,0.45062,0.23578,0.52365,0.17176,0.48713,0.20948 +SC5314 X SC5314 Tetraploid,Candida albicans,Unassigned,Unknown,a/α,LEE,30,-,-,0.05697,0.02641,0.05697,0.02641 +SC5314 X SC5314 Tetraploid,Candida albicans,Unassigned,Unknown,a/α,YPD,37,-,-,0.85389,0.06076,0.85389,0.06076 +SC5314 X SC5314 Tetraploid,Candida albicans,Unassigned,Unknown,a/α,LEE,37,-,-,1.0,0.0,1.0,0.0 +SC5314 X SC5314 Tetraploid,Candida albicans,Unassigned,Unknown,a/α,YPD,30,-,-,0.83159,0.14958,0.83159,0.14958 +SC5314 X SC5314 Tetraploid,Candida albicans,Unassigned,Unknown,a/α,SPI,37,-,-,1.0,0.0,1.0,0.0 +SC5314 X SC5314 Tetraploid,Candida albicans,Unassigned,Unknown,a/α,SPI,30,-,-,0.91896,0.0584,0.91896,0.0584 +WO-1,Candida albicans,WO-1,Bloodstream,α/α,LEE,37,0.11826,0.07866,0.08255,0.02993,0.10041,0.06213 +WO-1,Candida albicans,WO-1,Bloodstream,α/α,LEE,30,0.09402,0.01649,0.08434,0.03859,0.08918,0.03007 +WO-1,Candida albicans,WO-1,Bloodstream,α/α,SPI,30,0.07615,0.02668,0.10551,0.01848,0.09083,0.02724 +WO-1,Candida albicans,WO-1,Bloodstream,α/α,YPD,30,0.65838,0.12181,0.7831,0.1131,0.72074,0.13305 +WO-1,Candida albicans,WO-1,Bloodstream,α/α,YPD,37,0.72552,0.15428,0.60079,0.06865,0.66316,0.13471 +WO-1,Candida albicans,WO-1,Bloodstream,α/α,SPI,37,0.17179,0.02492,0.13819,0.07767,0.15499,0.06008 diff --git a/Sorted_Files/biofilm_scores_sorted.csv b/Sorted_Files/biofilm_scores_sorted.csv new file mode 100644 index 0000000000000000000000000000000000000000..a1ad882ea3442ba72a0ca027a0e6dc9659bb5389 --- /dev/null +++ b/Sorted_Files/biofilm_scores_sorted.csv @@ -0,0 +1,185 @@ +MAY Strain #,Species,Soll Clade,Isolation Site,Media,Temperature(°C),Total Average Phenotype Score,Total Phenotype Score St. Dev. +12C,Candida albicans,I,Oral cavity,LEE,30,0.095333333,0.020572365 +12C,Candida albicans,I,Oral cavity,SPI,30,0.201,0.017663522 +12C,Candida albicans,I,Oral cavity,YPD,30,0.687833333,0.051020965 +12C,Candida albicans,I,Oral cavity,RPMIS,30,0.38825,0.051392485 +12C,Candida albicans,I,Oral cavity,LEE,37,0.070166667,0.007717225 +12C,Candida albicans,I,Oral cavity,SPI,37,0.091333333,0.009358597 +12C,Candida albicans,I,Oral cavity,YPD,37,0.311,0.041115353 +12C,Candida albicans,I,Oral cavity,RPMIS,37,0.38425,0.050662486 +19F,Candida albicans,I,Vagina,LEE,30,0.116333333,0.03058322 +19F,Candida albicans,I,Vagina,SPI,30,0.288833333,0.108809849 +19F,Candida albicans,I,Vagina,YPD,30,0.552333333,0.026159766 +19F,Candida albicans,I,Vagina,RPMIS,30,0.46975,0.061304058 +19F,Candida albicans,I,Vagina,LEE,37,0.0315,0.035251478 +19F,Candida albicans,I,Vagina,SPI,37,0.158166667,0.156771242 +19F,Candida albicans,I,Vagina,YPD,37,0.527,0.176534935 +19F,Candida albicans,I,Vagina,RPMIS,37,0.309,0.025719642 +529L,Candida albicans,529L,Oral cavity,LEE,30,0.172138889,0.029546325 +529L,Candida albicans,529L,Oral cavity,SPI,30,0.228333333,0.020055479 +529L,Candida albicans,529L,Oral cavity,YPD,30,0.525833333,0.121769477 +529L,Candida albicans,529L,Oral cavity,RPMIS,30,0.4805,0.055868148 +529L,Candida albicans,529L,Oral cavity,LEE,37,0.029566667,0.004127953 +529L,Candida albicans,529L,Oral cavity,SPI,37,0.047,0.017198999 +529L,Candida albicans,529L,Oral cavity,YPD,37,0.222833333,0.025597309 +529L,Candida albicans,529L,Oral cavity,RPMIS,37,0.33325,0.191030593 +GC75,Candida albicans,SA,Oral cavity,LEE,30,0.142,0.022211108 +GC75,Candida albicans,SA,Oral cavity,SPI,30,0.191666667,0.02208066 +GC75,Candida albicans,SA,Oral cavity,YPD,30,0.382666667,0.021959559 +GC75,Candida albicans,SA,Oral cavity,RPMIS,30,0.43125,0.036975499 +GC75,Candida albicans,SA,Oral cavity,LEE,37,0.036,0.019735051 +GC75,Candida albicans,SA,Oral cavity,SPI,37,0.1405,0.044180187 +GC75,Candida albicans,SA,Oral cavity,YPD,37,0.739,0.154473748 +GC75,Candida albicans,SA,Oral cavity,RPMIS,37,0.22875,0.125831981 +L26,Candida albicans,I,Vagina,LEE,30,0.092666667,0.021644219 +L26,Candida albicans,I,Vagina,SPI,30,0.240166667,0.011728408 +L26,Candida albicans,I,Vagina,YPD,30,0.578,0.052860666 +L26,Candida albicans,I,Vagina,RPMIS,30,0.44175,0.08934029 +L26,Candida albicans,I,Vagina,LEE,37,0.0385,0.010011105 +L26,Candida albicans,I,Vagina,SPI,37,0.189666667,0.084082136 +L26,Candida albicans,I,Vagina,YPD,37,0.200166667,0.004818944 +L26,Candida albicans,I,Vagina,RPMIS,37,0.6155,0.035654593 +P34048,Candida albicans,III,Bloodstream,LEE,30,0.1875,0.013313527 +P34048,Candida albicans,III,Bloodstream,SPI,30,0.2645,0.018282505 +P34048,Candida albicans,III,Bloodstream,YPD,30,0.4895,0.046867722 +P34048,Candida albicans,III,Bloodstream,RPMIS,30,0.48575,0.042646073 +P34048,Candida albicans,III,Bloodstream,LEE,37,0.067833333,0.009994443 +P34048,Candida albicans,III,Bloodstream,SPI,37,0.099666667,0.012829004 +P34048,Candida albicans,III,Bloodstream,YPD,37,0.186833333,0.046366894 +P34048,Candida albicans,III,Bloodstream,RPMIS,37,0.41425,0.14261377 +P37005,Candida albicans,I,Oral cavity,LEE,30,0.094333333,0.013421583 +P37005,Candida albicans,I,Oral cavity,SPI,30,0.271833333,0.012432037 +P37005,Candida albicans,I,Oral cavity,YPD,30,0.825666667,0.018649546 +P37005,Candida albicans,I,Oral cavity,RPMIS,30,0.5385,0.011412712 +P37005,Candida albicans,I,Oral cavity,LEE,37,0.043,0.009788031 +P37005,Candida albicans,I,Oral cavity,SPI,37,0.140166667,0.016079663 +P37005,Candida albicans,I,Oral cavity,YPD,37,0.476833333,0.064052062 +P37005,Candida albicans,I,Oral cavity,RPMIS,37,0.423,0.109416635 +P37037,Candida albicans,I,Oral cavity,LEE,30,0.102166667,0.004633813 +P37037,Candida albicans,I,Oral cavity,SPI,30,0.193,0.018015425 +P37037,Candida albicans,I,Oral cavity,YPD,30,0.525666667,0.050334437 +P37037,Candida albicans,I,Oral cavity,RPMIS,30,0.55625,0.008227241 +P37037,Candida albicans,I,Oral cavity,LEE,37,0.116166667,0.089786166 +P37037,Candida albicans,I,Oral cavity,SPI,37,0.025,0.028732966 +P37037,Candida albicans,I,Oral cavity,YPD,37,0.092833333,0.039630235 +P37037,Candida albicans,I,Oral cavity,RPMIS,37,0.29075,0.078499602 +P37039,Candida albicans,I,Bloodstream,LEE,30,0.08,0.014302292 +P37039,Candida albicans,I,Bloodstream,SPI,30,0.233166667,0.018697148 +P37039,Candida albicans,I,Bloodstream,YPD,30,0.761166667,0.03512715 +P37039,Candida albicans,I,Bloodstream,RPMIS,30,0.3355,0.077902182 +P37039,Candida albicans,I,Bloodstream,LEE,37,0.032666667,0.007371115 +P37039,Candida albicans,I,Bloodstream,SPI,37,0.081333333,0.017240134 +P37039,Candida albicans,I,Bloodstream,YPD,37,0.556833333,0.214545579 +P37039,Candida albicans,I,Bloodstream,RPMIS,37,0.22,0.024413111 +P57055,Candida albicans,III,Bloodstream,LEE,30,0.122666667,0.01060922 +P57055,Candida albicans,III,Bloodstream,SPI,30,0.243166667,0.011710631 +P57055,Candida albicans,III,Bloodstream,YPD,30,0.384833333,0.014314911 +P57055,Candida albicans,III,Bloodstream,RPMIS,30,0.57875,0.070669566 +P57055,Candida albicans,III,Bloodstream,LEE,37,0.0255,0.008205689 +P57055,Candida albicans,III,Bloodstream,SPI,37,0.2765,0.062311048 +P57055,Candida albicans,III,Bloodstream,YPD,37,0.442,0.199082688 +P57055,Candida albicans,III,Bloodstream,RPMIS,37,0.20675,0.067599464 +P57072,Candida albicans,II,Bloodstream,LEE,30,0.142833333,0.03977611 +P57072,Candida albicans,II,Bloodstream,SPI,30,0.224166667,0.099432417 +P57072,Candida albicans,II,Bloodstream,YPD,30,0.522666667,0.051629019 +P57072,Candida albicans,II,Bloodstream,RPMIS,30,0.3735,0.175774714 +P57072,Candida albicans,II,Bloodstream,LEE,37,0.093166667,0.01338739 +P57072,Candida albicans,II,Bloodstream,SPI,37,0.149166667,0.081202764 +P57072,Candida albicans,II,Bloodstream,YPD,37,0.999,0.15214622 +P57072,Candida albicans,II,Bloodstream,RPMIS,37,0.18625,0.044465577 +P60002,Candida albicans,SA,Bloodstream,LEE,30,0.130333333,0.023534844 +P60002,Candida albicans,SA,Bloodstream,SPI,30,0.200666667,0.012569805 +P60002,Candida albicans,SA,Bloodstream,YPD,30,0.312,0.133677057 +P60002,Candida albicans,SA,Bloodstream,RPMIS,30,0.4495,0.095348047 +P60002,Candida albicans,SA,Bloodstream,LEE,37,0.093,0.056799844 +P60002,Candida albicans,SA,Bloodstream,SPI,37,0.262,0.128355842 +P60002,Candida albicans,SA,Bloodstream,YPD,37,0.834,0.229289967 +P60002,Candida albicans,SA,Bloodstream,RPMIS,37,0.2175,0.018674849 +P75010,Candida albicans,E,Bloodstream,LEE,30,0.100833333,0.028121265 +P75010,Candida albicans,E,Bloodstream,SPI,30,0.251,0.129727492 +P75010,Candida albicans,E,Bloodstream,YPD,30,0.549,0.043755635 +P75010,Candida albicans,E,Bloodstream,RPMIS,30,0.325,0.093171884 +P75010,Candida albicans,E,Bloodstream,LEE,37,0.0405,0.009616248 +P75010,Candida albicans,E,Bloodstream,SPI,37,0.309833333,0.112417995 +P75010,Candida albicans,E,Bloodstream,YPD,37,0.148666667,0.063838337 +P75010,Candida albicans,E,Bloodstream,RPMIS,37,0.30575,0.05952468 +P75016,Candida albicans,SA,Bloodstream,LEE,30,0.134166667,0.013973189 +P75016,Candida albicans,SA,Bloodstream,SPI,30,0.187333333,0.014161764 +P75016,Candida albicans,SA,Bloodstream,YPD,30,0.3835,0.076235199 +P75016,Candida albicans,SA,Bloodstream,RPMIS,30,0.5255,0.043797831 +P75016,Candida albicans,SA,Bloodstream,LEE,37,0.054166667,0.025584826 +P75016,Candida albicans,SA,Bloodstream,SPI,37,0.1315,0.052787046 +P75016,Candida albicans,SA,Bloodstream,YPD,37,0.055333333,0.025249862 +P75016,Candida albicans,SA,Bloodstream,RPMIS,37,0.22175,0.048592052 +P75063,Candida albicans,SA,Bloodstream,LEE,30,0.097833333,0.028726681 +P75063,Candida albicans,SA,Bloodstream,SPI,30,0.2305,0.118026833 +P75063,Candida albicans,SA,Bloodstream,YPD,30,0.481333333,0.018397615 +P75063,Candida albicans,SA,Bloodstream,RPMIS,30,0.33625,0.132660045 +P75063,Candida albicans,SA,Bloodstream,LEE,37,0.031333333,0.010563301 +P75063,Candida albicans,SA,Bloodstream,SPI,37,0.127333333,0.049466319 +P75063,Candida albicans,SA,Bloodstream,YPD,37,0.230666667,0.085450603 +P75063,Candida albicans,SA,Bloodstream,RPMIS,37,0.52,0.174809897 +P76055,Candida albicans,II,Bloodstream,LEE,30,0.099166667,0.022549329 +P76055,Candida albicans,II,Bloodstream,SPI,30,0.185166667,0.023723523 +P76055,Candida albicans,II,Bloodstream,YPD,30,0.585333333,0.059951833 +P76055,Candida albicans,II,Bloodstream,RPMIS,30,0.3875,0.116879211 +P76055,Candida albicans,II,Bloodstream,LEE,37,0.087833333,0.047346242 +P76055,Candida albicans,II,Bloodstream,SPI,37,0.1255,0.041322579 +P76055,Candida albicans,II,Bloodstream,YPD,37,1.149833333,0.061313403 +P76055,Candida albicans,II,Bloodstream,RPMIS,37,0.24725,0.019651654 +P76067,Candida albicans,II,Bloodstream,LEE,30,0.0745,0.026060293 +P76067,Candida albicans,II,Bloodstream,SPI,30,0.229,0.090368997 +P76067,Candida albicans,II,Bloodstream,YPD,30,0.547666667,0.272198253 +P76067,Candida albicans,II,Bloodstream,RPMIS,30,0.4625,0.038771768 +P76067,Candida albicans,II,Bloodstream,LEE,37,0,0.015227898 +P76067,Candida albicans,II,Bloodstream,SPI,37,0.252666667,0.080844329 +P76067,Candida albicans,II,Bloodstream,YPD,37,0.515833333,0.261253176 +P76067,Candida albicans,II,Bloodstream,RPMIS,37,0.23175,0.044132613 +P78042,Candida albicans,III,Bloodstream,LEE,30,0.1085,0.025751483 +P78042,Candida albicans,III,Bloodstream,SPI,30,0.263666667,0.015362291 +P78042,Candida albicans,III,Bloodstream,YPD,30,0.616333333,0.050002222 +P78042,Candida albicans,III,Bloodstream,RPMIS,30,0.48875,0.040812835 +P78042,Candida albicans,III,Bloodstream,LEE,37,0.066833333,0.017062793 +P78042,Candida albicans,III,Bloodstream,SPI,37,0.265666667,0.060271607 +P78042,Candida albicans,III,Bloodstream,YPD,37,0.330333333,0.219723817 +P78042,Candida albicans,III,Bloodstream,RPMIS,37,0.413,0.13221006 +P78048,Candida albicans,I,Bloodstream,LEE,30,0.130666667,0.009546669 +P78048,Candida albicans,I,Bloodstream,SPI,30,0.227,0.010657548 +P78048,Candida albicans,I,Bloodstream,YPD,30,0.7795,0.022375582 +P78048,Candida albicans,I,Bloodstream,RPMIS,30,0.473,0.071417785 +P78048,Candida albicans,I,Bloodstream,LEE,37,0.038666667,0.007289643 +P78048,Candida albicans,I,Bloodstream,SPI,37,0.0675,0.009706813 +P78048,Candida albicans,I,Bloodstream,YPD,37,0.285666667,0.064599837 +P78048,Candida albicans,I,Bloodstream,RPMIS,37,0.46375,0.108596443 +P87,Candida albicans,SA,Oral cavity,LEE,30,0.1075,0.013503086 +P87,Candida albicans,SA,Oral cavity,SPI,30,0.198333333,0.018568941 +P87,Candida albicans,SA,Oral cavity,YPD,30,0.555833333,0.046129046 +P87,Candida albicans,SA,Oral cavity,RPMIS,30,0.44275,0.106062187 +P87,Candida albicans,SA,Oral cavity,LEE,37,0.033666667,0.007559027 +P87,Candida albicans,SA,Oral cavity,SPI,37,0.423,0.023212185 +P87,Candida albicans,SA,Oral cavity,YPD,37,0.125333333,0.067227846 +P87,Candida albicans,SA,Oral cavity,RPMIS,37,0.479,0.166022589 +P94015,Candida albicans,I,Bloodstream,LEE,30,0.053333333,0.006497863 +P94015,Candida albicans,I,Bloodstream,SPI,30,0.0115,0.003947573 +P94015,Candida albicans,I,Bloodstream,YPD,30,0.226166667,0.022637849 +P94015,Candida albicans,I,Bloodstream,RPMIS,30,0.127,0.107812337 +P94015,Candida albicans,I,Bloodstream,LEE,37,0.069666667,0.007243771 +P94015,Candida albicans,I,Bloodstream,SPI,37,0.033833333,0.008698659 +P94015,Candida albicans,I,Bloodstream,YPD,37,0.052333333,0.007932003 +P94015,Candida albicans,I,Bloodstream,RPMIS,37,0.0935,0.015724185 +SC5314,Candida albicans,I,Bloodstream,LEE,30,0.136166667,0.015614274 +SC5314,Candida albicans,I,Bloodstream,SPI,30,0.295833333,0.01332604 +SC5314,Candida albicans,I,Bloodstream,YPD,30,0.942333333,0.112602546 +SC5314,Candida albicans,I,Bloodstream,RPMIS,30,0.565,0.048020829 +SC5314,Candida albicans,I,Bloodstream,LEE,37,0.191,0.035179303 +SC5314,Candida albicans,I,Bloodstream,SPI,37,0.2955,0.018147543 +SC5314,Candida albicans,I,Bloodstream,YPD,37,1.090166667,0.034047353 +SC5314,Candida albicans,I,Bloodstream,RPMIS,37,0.29625,0.055169625 +WO-1,Candida albicans,WO-1,Bloodstream,LEE,30,0.085166667,0.022086321 +WO-1,Candida albicans,WO-1,Bloodstream,SPI,30,0.182333333,0.038016078 +WO-1,Candida albicans,WO-1,Bloodstream,YPD,30,0.3555,0.085379057 +WO-1,Candida albicans,WO-1,Bloodstream,RPMIS,30,0.3245,0.026537709 +WO-1,Candida albicans,WO-1,Bloodstream,LEE,37,0.027,0.012212243 +WO-1,Candida albicans,WO-1,Bloodstream,SPI,37,0.080833333,0.038594761 +WO-1,Candida albicans,WO-1,Bloodstream,YPD,37,0.178166667,0.123078566 +WO-1,Candida albicans,WO-1,Bloodstream,RPMIS,37,0.29425,0.043585405 diff --git a/Sorted_Files/filamentation_scores_sorted.csv b/Sorted_Files/filamentation_scores_sorted.csv new file mode 100644 index 0000000000000000000000000000000000000000..5d223aed47cb7e79b868d92da5e590ad5cdde274 --- /dev/null +++ b/Sorted_Files/filamentation_scores_sorted.csv @@ -0,0 +1,200 @@ +MAY Strain #,Species,Soll Clade,Isolation Site, MTL Genotype, Media,Temperature(°C),MJD Phenotype Score,MJD Score St. Dev.,RJF Phenotype Score,RJF Score St. Dev.,Total Average Phenotype Score,Total Phenotype Score St. Dev. +12C,Candida albicans,I,Oral cavity,a/a,SPI,30,0.2469,0.01296,0.39794,0.17955,0.32242,0.14801 +12C,Candida albicans,I,Oral cavity,a/a,YPD,37,0.14053,0.01972,0.15817,0.03985,0.15111,0.0344 +12C,Candida albicans,I,Oral cavity,a/a,LEE,37,-0.27621,0.27175,-0.51195,0.25542,-0.39408,0.28885 +12C,Candida albicans,I,Oral cavity,a/a,YPD,30,0.24524,0.14067,0.21748,0.09501,0.23136,0.12083 +12C,Candida albicans,I,Oral cavity,a/a,LEE,30,-0.04099,0.04034,-0.08852,0.00525,-0.06476,0.03731 +12C,Candida albicans,I,Oral cavity,a/a,SPI,37,0.36402,0.11843,0.46793,0.3715,0.42637,0.30168 +19F,Candida albicans,I,Vagina,α/α,LEE,30,-0.03515,0.0075,-0.06619,0.06579,-0.05067,0.04932 +19F,Candida albicans,I,Vagina,α/α,SPI,30,0.32672,0.0526,0.2889,0.00079,0.30781,0.04173 +19F,Candida albicans,I,Vagina,α/α,SPI,37,0.36736,0.15235,0.3179,0.00507,0.34263,0.11059 +19F,Candida albicans,I,Vagina,α/α,YPD,30,0.25653,0.15647,0.21744,0.10667,0.23699,0.13532 +19F,Candida albicans,I,Vagina,α/α,YPD,37,0.07693,0.05958,0.01134,0.07934,0.04413,0.07745 +19F,Candida albicans,I,Vagina,α/α,LEE,37,-0.08923,0.03871,-0.27054,0.18985,-0.17988,0.16428 +529L,Candida albicans,529L,Oral cavity,a/α,LEE,37,-0.172,0.03372,-0.05364,0.05817,-0.11282,0.07591 +529L,Candida albicans,529L,Oral cavity,a/α,YPD,30,0.10265,0.05696,0.13797,0.02159,0.12031,0.04655 +529L,Candida albicans,529L,Oral cavity,a/α,YPD,37,0.07727,0.04461,0.19281,0.05065,0.13504,0.07494 +529L,Candida albicans,529L,Oral cavity,a/α,LEE,30,-0.02499,0.05624,-0.06038,0.05067,-0.04269,0.05638 +529L,Candida albicans,529L,Oral cavity,a/α,SPI,30,0.76397,0.3195,0.35123,0.14109,0.5576,0.32184 +529L,Candida albicans,529L,Oral cavity,a/α,SPI,37,0.441,0.16246,0.62106,0.24005,0.53103,0.22386 +C. dubliniensis,Candida dubliniensis,Unassigned,Unknown,Unknown,SPI,37,0.24781,0.03583,0.36425,0.04264,0.30603,0.07029 +C. dubliniensis,Candida dubliniensis,Unassigned,Unknown,Unknown,YPD,30,0.05676,0.09029,0.04575,0.04257,0.05126,0.0708 +C. dubliniensis,Candida dubliniensis,Unassigned,Unknown,Unknown,LEE,30,-0.09071,0.00615,-0.13012,0.04834,-0.11042,0.03969 +C. dubliniensis,Candida dubliniensis,Unassigned,Unknown,Unknown,LEE,37,-0.09417,0.00854,-0.06888,0.03844,-0.08152,0.03058 +C. dubliniensis,Candida dubliniensis,Unassigned,Unknown,Unknown,YPD,37,0.03957,0.0529,0.04343,0.08728,0.0415,0.0722 +C. dubliniensis,Candida dubliniensis,Unassigned,Unknown,Unknown,SPI,30,0.30104,0.08522,0.22617,0.04188,0.2636,0.07687 +C. glabrata,Candida glabrata,Unassigned,Unknown,Unknown,YPD,30,0.15515,0.0585,0.11862,0.02578,0.13688,0.04876 +C. glabrata,Candida glabrata,Unassigned,Unknown,Unknown,LEE,37,-,-,-0.94378,0.0,-0.94378,0.0 +C. glabrata,Candida glabrata,Unassigned,Unknown,Unknown,YPD,37,0.06456,0.03519,0.13739,0.06159,0.10097,0.06198 +C. guilliermondii,Candida guilliermondii,Unassigned,Unknown,Unknown,LEE,37,-0.41139,0.26335,-0.34331,0.11452,-0.37735,0.2059 +C. guilliermondii,Candida guilliermondii,Unassigned,Unknown,Unknown,SPI,37,0.32199,0.10372,0.15624,0.0,0.26674,0.11522 +C. guilliermondii,Candida guilliermondii,Unassigned,Unknown,Unknown,SPI,30,0.33624,0.09503,0.20926,0.10146,0.27275,0.11702 +C. guilliermondii,Candida guilliermondii,Unassigned,Unknown,Unknown,YPD,30,0.15992,0.09481,0.26865,0.24097,0.21429,0.19101 +C. guilliermondii,Candida guilliermondii,Unassigned,Unknown,Unknown,LEE,30,-0.01005,0.03254,-0.05153,0.02146,-0.03079,0.0345 +C. guilliermondii,Candida guilliermondii,Unassigned,Unknown,Unknown,YPD,37,-0.21357,0.06394,-0.10166,0.16278,-0.15761,0.13573 +C. lusitaniae,Candida lusitaniae,Unassigned,Unknown,Unknown,YPD,30,0.07779,0.13593,0.07297,0.13369,0.07538,0.13484 +C. lusitaniae,Candida lusitaniae,Unassigned,Unknown,Unknown,LEE,30,-0.54076,0.32417,-0.7046,0.28829,-0.60629,0.32053 +C. lusitaniae,Candida lusitaniae,Unassigned,Unknown,Unknown,SPI,30,0.56116,0.48918,0.25159,0.09042,0.40637,0.38431 +C. lusitaniae,Candida lusitaniae,Unassigned,Unknown,Unknown,SPI,37,0.26615,0.11077,0.249,0.11255,0.25757,0.11199 +C. lusitaniae,Candida lusitaniae,Unassigned,Unknown,Unknown,YPD,37,-0.22496,0.06288,-0.22019,0.03057,-0.22258,0.0495 +C. lusitaniae,Candida lusitaniae,Unassigned,Unknown,Unknown,LEE,37,-0.99192,0.0,-0.84045,0.14364,-0.89094,0.13731 +C. metapsilosis,Candida metapsilosis,Unassigned,Unknown,Unknown,LEE,37,-0.22235,0.11556,-0.2052,0.23321,-0.21378,0.18424 +C. metapsilosis,Candida metapsilosis,Unassigned,Unknown,Unknown,YPD,30,-0.07796,0.09885,-0.00681,0.14046,-0.04239,0.12655 +C. metapsilosis,Candida metapsilosis,Unassigned,Unknown,Unknown,SPI,30,0.30278,0.13274,0.207,0.04062,0.25489,0.10922 +C. metapsilosis,Candida metapsilosis,Unassigned,Unknown,Unknown,SPI,37,0.21959,0.06781,0.4381,0.03631,0.32885,0.12205 +C. metapsilosis,Candida metapsilosis,Unassigned,Unknown,Unknown,YPD,37,0.09249,0.06226,0.12914,0.04499,0.11081,0.05732 +C. metapsilosis,Candida metapsilosis,Unassigned,Unknown,Unknown,LEE,30,-0.15502,0.1182,-0.07582,0.04223,-0.1075,0.09036 +C. orthopsilosis,Candida orthopsilosis,Unassigned,Unknown,Unknown,YPD,30,0.00195,0.00629,0.12229,0.05282,0.06212,0.07096 +C. orthopsilosis,Candida orthopsilosis,Unassigned,Unknown,Unknown,LEE,37,-0.20177,0.12749,-0.4274,0.27437,-0.31458,0.24185 +C. orthopsilosis,Candida orthopsilosis,Unassigned,Unknown,Unknown,YPD,37,0.12992,0.05153,0.12018,0.04618,0.12505,0.04917 +C. orthopsilosis,Candida orthopsilosis,Unassigned,Unknown,Unknown,SPI,37,0.16815,0.00448,0.43853,0.15725,0.30334,0.17508 +C. orthopsilosis,Candida orthopsilosis,Unassigned,Unknown,Unknown,SPI,30,0.23153,0.10967,0.26259,0.08374,0.24706,0.0988 +C. orthopsilosis,Candida orthopsilosis,Unassigned,Unknown,Unknown,LEE,30,-0.04323,0.05308,-0.0938,0.0239,-0.06852,0.04831 +C. parapsilosis,Candida parapsilosis,Unassigned,Unknown,Unknown,SPI,37,0.36743,0.06326,0.43847,0.20635,0.40295,0.1567 +C. parapsilosis,Candida parapsilosis,Unassigned,Unknown,Unknown,SPI,30,0.28243,0.15136,0.23881,0.07967,0.26062,0.1229 +C. parapsilosis,Candida parapsilosis,Unassigned,Unknown,Unknown,LEE,37,-0.04981,0.01764,-0.03897,0.05943,-0.04439,0.04417 +C. parapsilosis,Candida parapsilosis,Unassigned,Unknown,Unknown,YPD,37,0.13605,0.24846,0.0231,0.09149,0.07958,0.19555 +C. parapsilosis,Candida parapsilosis,Unassigned,Unknown,Unknown,LEE,30,-0.04933,0.06285,-0.00941,0.07677,-0.02937,0.07294 +C. parapsilosis,Candida parapsilosis,Unassigned,Unknown,Unknown,YPD,30,-0.42041,0.13892,-0.01768,0.18182,-0.21905,0.25832 +C. tropicalis,Candida tropicalis,Unassigned,Unknown,Unknown,YPD,37,-0.7128,0.20086,-0.69268,0.02089,-0.70274,0.14315 +C. tropicalis,Candida tropicalis,Unassigned,Unknown,Unknown,LEE,30,-0.10381,0.03996,-0.03811,0.01823,-0.07096,0.04521 +C. tropicalis,Candida tropicalis,Unassigned,Unknown,Unknown,SPI,37,0.15472,0.02769,0.30526,0.12722,0.22999,0.11892 +C. tropicalis,Candida tropicalis,Unassigned,Unknown,Unknown,LEE,37,-0.12555,0.05853,-0.05436,0.04979,-0.08996,0.06495 +C. tropicalis,Candida tropicalis,Unassigned,Unknown,Unknown,YPD,30,-0.49631,0.17565,-0.39051,0.121,-0.44341,0.15983 +C. tropicalis,Candida tropicalis,Unassigned,Unknown,Unknown,SPI,30,0.37698,0.03054,0.55278,0.07875,0.46488,0.10627 +D. hansenii,Debaryomyces hansenii,Unassigned,Unknown,Unknown,LEE,30,-0.13692,0.16359,-0.06799,0.10657,-0.10246,0.14229 +D. hansenii,Debaryomyces hansenii,Unassigned,Unknown,Unknown,LEE,37,-,-,-0.92528,0.09164,-0.92528,0.09164 +D. hansenii,Debaryomyces hansenii,Unassigned,Unknown,Unknown,SPI,30,3.53262,1.56853,0.24005,0.03561,1.55708,1.89386 +D. hansenii,Debaryomyces hansenii,Unassigned,Unknown,Unknown,YPD,30,0.05225,0.04798,0.0238,0.02258,0.03803,0.0401 +GC75,Candida albicans,SA,Oral cavity,a/α,YPD,37,0.12178,0.04529,0.05406,0.0492,0.08792,0.05816 +GC75,Candida albicans,SA,Oral cavity,a/α,YPD,30,0.143,0.06843,0.02702,0.03582,0.08501,0.07966 +GC75,Candida albicans,SA,Oral cavity,a/α,SPI,37,0.22402,0.02924,0.35762,0.06411,0.29082,0.08333 +GC75,Candida albicans,SA,Oral cavity,a/α,SPI,30,0.28803,0.12367,0.28736,0.02878,0.2877,0.08979 +GC75,Candida albicans,SA,Oral cavity,a/α,LEE,30,-0.1212,0.04089,-0.50867,0.11858,-0.31493,0.21307 +GC75,Candida albicans,SA,Oral cavity,a/α,LEE,37,-0.10733,0.12608,-0.32594,0.13508,-0.21664,0.17035 +L. elongisporus,Lodderomyces elongisporus,Unassigned,Unknown,Unknown,SPI,37,0.53982,0.28792,0.27983,0.05117,0.43583,0.25886 +L. elongisporus,Lodderomyces elongisporus,Unassigned,Unknown,Unknown,SPI,30,0.28988,0.10074,0.35449,0.1726,0.32219,0.14496 +L. elongisporus,Lodderomyces elongisporus,Unassigned,Unknown,Unknown,LEE,37,-0.02554,0.04844,-0.51378,0.41735,-0.26966,0.38452 +L. elongisporus,Lodderomyces elongisporus,Unassigned,Unknown,Unknown,YPD,37,0.10074,0.05249,0.0418,0.09143,0.07127,0.08016 +L. elongisporus,Lodderomyces elongisporus,Unassigned,Unknown,Unknown,LEE,30,0.12302,0.10905,-0.01958,0.01244,0.05172,0.10539 +L. elongisporus,Lodderomyces elongisporus,Unassigned,Unknown,Unknown,YPD,30,0.16155,0.04651,0.1584,0.11125,0.15997,0.08528 +L26,Candida albicans,I,Vagina,a/a,SPI,30,0.1824,0.03441,0.28318,0.05332,0.23279,0.06747 +L26,Candida albicans,I,Vagina,a/a,YPD,37,0.4013,0.31601,0.09973,0.04673,0.30077,0.29583 +L26,Candida albicans,I,Vagina,a/a,YPD,30,0.22953,0.02028,0.1358,0.08309,0.18267,0.07651 +L26,Candida albicans,I,Vagina,a/a,LEE,30,-0.04675,0.03686,-0.41031,0.36015,-0.22853,0.31397 +L26,Candida albicans,I,Vagina,a/a,SPI,37,0.14651,0.01592,0.47404,0.16117,0.34302,0.20355 +L26,Candida albicans,I,Vagina,a/a,LEE,37,-0.18102,0.15419,-0.82338,0.02109,-0.5022,0.33951 +P34048,Candida albicans,III,Bloodstream,a/α,LEE,37,-0.07721,0.06021,-0.56364,0.23517,-0.32043,0.29769 +P34048,Candida albicans,III,Bloodstream,a/α,SPI,30,0.34379,0.15011,0.24816,0.06084,0.29598,0.12411 +P34048,Candida albicans,III,Bloodstream,a/α,YPD,37,0.24187,0.38409,0.13585,0.14936,0.19643,0.31083 +P34048,Candida albicans,III,Bloodstream,a/α,YPD,30,0.0484,0.052,0.07903,0.0754,0.06372,0.06655 +P34048,Candida albicans,III,Bloodstream,a/α,SPI,37,0.40667,0.19144,0.33579,0.15025,0.37123,0.17569 +P34048,Candida albicans,III,Bloodstream,a/α,LEE,30,-0.13806,0.25482,-0.19441,0.21593,-0.16624,0.23785 +P37005,Candida albicans,I,Oral cavity,a/a,YPD,37,0.40995,0.30997,0.1583,0.13341,0.32607,0.28993 +P37005,Candida albicans,I,Oral cavity,a/a,YPD,30,0.08293,0.07678,0.05511,0.03795,0.06902,0.06214 +P37005,Candida albicans,I,Oral cavity,a/a,LEE,37,-0.05025,0.07355,-0.03269,0.04913,-0.04147,0.06316 +P37005,Candida albicans,I,Oral cavity,a/a,LEE,30,-0.27506,0.35284,-0.05103,0.08298,-0.16304,0.27971 +P37005,Candida albicans,I,Oral cavity,a/a,SPI,30,0.22349,0.06303,0.19419,0.03096,0.20884,0.05177 +P37005,Candida albicans,I,Oral cavity,a/a,SPI,37,0.37134,0.084,0.21147,0.05498,0.27542,0.10378 +P37037,Candida albicans,I,Oral cavity,a/α,SPI,30,0.42458,0.16919,0.20811,0.03882,0.31635,0.16365 +P37037,Candida albicans,I,Oral cavity,a/α,LEE,30,-0.01747,0.02972,-0.0878,0.02925,-0.05264,0.04589 +P37037,Candida albicans,I,Oral cavity,a/α,YPD,30,0.18345,0.18786,0.17751,0.13348,0.18048,0.16298 +P37037,Candida albicans,I,Oral cavity,a/α,YPD,37,0.02876,0.06888,0.15137,0.05448,0.09882,0.08609 +P37037,Candida albicans,I,Oral cavity,a/α,LEE,37,-0.1874,0.20732,-0.02009,0.05022,-0.10374,0.17248 +P37037,Candida albicans,I,Oral cavity,a/α,SPI,37,0.57556,0.08937,0.47688,0.29484,0.52622,0.22336 +P37039,Candida albicans,I,Bloodstream,a/α,YPD,30,0.15024,0.12527,0.093,0.10566,0.12162,0.11937 +P37039,Candida albicans,I,Bloodstream,a/α,LEE,30,-0.0126,0.05173,-0.19819,0.31891,-0.1054,0.24658 +P37039,Candida albicans,I,Bloodstream,a/α,LEE,37,-0.06909,0.06682,-0.17973,0.24474,-0.12441,0.18773 +P37039,Candida albicans,I,Bloodstream,a/α,SPI,30,0.17708,0.03416,0.25065,0.05002,0.21387,0.05646 +P37039,Candida albicans,I,Bloodstream,a/α,SPI,37,0.22933,0.06008,0.28768,0.06033,0.2585,0.06691 +P37039,Candida albicans,I,Bloodstream,a/α,YPD,37,0.08914,0.14993,0.07312,0.10835,0.08113,0.13105 +P57055,Candida albicans,III,Bloodstream,a/α,LEE,30,-0.04046,0.05759,-0.31142,0.36746,-0.17594,0.29585 +P57055,Candida albicans,III,Bloodstream,a/α,LEE,37,-0.09342,0.13074,-0.08379,0.04193,-0.08861,0.09721 +P57055,Candida albicans,III,Bloodstream,a/α,YPD,30,0.11791,0.01678,0.07271,0.04972,0.09531,0.04345 +P57055,Candida albicans,III,Bloodstream,a/α,SPI,37,0.37073,0.21586,0.30106,0.08404,0.3359,0.16746 +P57055,Candida albicans,III,Bloodstream,a/α,YPD,37,0.04478,0.0718,0.01312,0.17319,0.02895,0.13351 +P57055,Candida albicans,III,Bloodstream,a/α,SPI,30,0.34398,0.28243,0.23475,0.03919,0.28936,0.20889 +P57072,Candida albicans,II,Bloodstream,α/α,SPI,30,0.27147,0.09582,0.18553,0.05762,0.2285,0.08998 +P57072,Candida albicans,II,Bloodstream,α/α,SPI,37,0.28902,0.08601,0.47858,0.20827,0.37518,0.18072 +P57072,Candida albicans,II,Bloodstream,α/α,LEE,37,-0.25818,0.29755,-0.377,0.26048,-0.31759,0.28587 +P57072,Candida albicans,II,Bloodstream,α/α,YPD,30,0.1332,0.08506,0.06669,0.09986,0.09995,0.09854 +P57072,Candida albicans,II,Bloodstream,α/α,LEE,30,-0.23778,0.20026,-0.02885,0.06863,-0.13332,0.18254 +P57072,Candida albicans,II,Bloodstream,α/α,YPD,37,0.1785,0.28389,0.06796,0.07799,0.13113,0.22728 +P60002,Candida albicans,SA,Bloodstream,a/a,LEE,37,-0.10764,0.08043,-0.09909,0.04194,-0.10337,0.06428 +P60002,Candida albicans,SA,Bloodstream,a/a,LEE,30,-0.09777,0.05773,-0.08857,0.0586,-0.09317,0.05835 +P60002,Candida albicans,SA,Bloodstream,a/a,YPD,30,0.08737,0.11095,0.03946,0.09158,0.06342,0.10451 +P60002,Candida albicans,SA,Bloodstream,a/a,SPI,37,0.38247,0.11911,0.33901,0.11068,0.36074,0.11701 +P60002,Candida albicans,SA,Bloodstream,a/a,YPD,37,0.02769,0.04956,0.07541,0.06554,0.05155,0.06281 +P60002,Candida albicans,SA,Bloodstream,a/a,SPI,30,0.28738,0.09165,0.41674,0.36199,0.35206,0.27185 +P75010,Candida albicans,E,Bloodstream,a/α,SPI,37,0.2752,0.04497,0.33501,0.10986,0.3051,0.08911 +P75010,Candida albicans,E,Bloodstream,a/α,YPD,30,0.12261,0.07198,0.18336,0.03999,0.15298,0.06567 +P75010,Candida albicans,E,Bloodstream,a/α,LEE,37,-0.09211,0.0736,-0.15669,0.08917,-0.1244,0.0879 +P75010,Candida albicans,E,Bloodstream,a/α,SPI,30,0.30983,0.13422,0.37159,0.34613,0.34071,0.26432 +P75010,Candida albicans,E,Bloodstream,a/α,YPD,37,0.09349,0.07765,0.10463,0.08116,0.09906,0.07962 +P75010,Candida albicans,E,Bloodstream,a/α,LEE,30,-0.1085,0.05142,-0.1093,0.04122,-0.1089,0.0466 +P75016,Candida albicans,SA,Bloodstream,a/α,SPI,37,0.37552,0.15942,0.36015,0.1474,0.36784,0.15372 +P75016,Candida albicans,SA,Bloodstream,a/α,SPI,30,0.27907,0.12028,0.28337,0.1203,0.28122,0.12031 +P75016,Candida albicans,SA,Bloodstream,a/α,YPD,30,0.10861,0.11907,0.12807,0.13663,0.11834,0.12852 +P75016,Candida albicans,SA,Bloodstream,a/α,LEE,30,-0.1514,0.10162,-0.12686,0.0782,-0.13913,0.0915 +P75016,Candida albicans,SA,Bloodstream,a/α,YPD,37,0.06838,0.07971,0.05395,0.04039,0.06117,0.0636 +P75016,Candida albicans,SA,Bloodstream,a/α,LEE,37,-0.06784,0.073,-0.07824,0.03059,-0.07304,0.05621 +P75063,Candida albicans,SA,Bloodstream,α/-,YPD,37,0.43639,0.31586,0.14589,0.11791,0.33956,0.29983 +P75063,Candida albicans,SA,Bloodstream,α/-,YPD,30,0.0826,0.09144,0.04716,0.02888,0.06488,0.07008 +P75063,Candida albicans,SA,Bloodstream,α/-,LEE,30,-0.00565,0.04619,-0.03542,0.08033,-0.02053,0.06719 +P75063,Candida albicans,SA,Bloodstream,α/-,LEE,37,-0.51613,0.27766,-0.01219,0.00601,-0.26416,0.31946 +P75063,Candida albicans,SA,Bloodstream,α/-,SPI,37,0.25639,0.0595,0.32908,0.09455,0.29274,0.08695 +P75063,Candida albicans,SA,Bloodstream,α/-,SPI,30,0.23418,0.04655,0.24566,0.07532,0.23992,0.06287 +P76055,Candida albicans,II,Bloodstream,a/α,SPI,30,0.27443,0.13986,0.16728,0.03279,0.22086,0.11484 +P76055,Candida albicans,II,Bloodstream,a/α,YPD,30,0.18004,0.16851,0.25785,0.09205,0.21895,0.14124 +P76055,Candida albicans,II,Bloodstream,a/α,LEE,37,-0.128,0.02438,-0.25605,0.13317,-0.19203,0.11517 +P76055,Candida albicans,II,Bloodstream,a/α,SPI,37,0.47839,0.23091,0.24837,0.08096,0.36338,0.20776 +P76055,Candida albicans,II,Bloodstream,a/α,LEE,30,-0.01368,0.06578,-0.01791,0.05565,-0.01579,0.06096 +P76055,Candida albicans,II,Bloodstream,a/α,YPD,37,0.12133,0.08353,0.25196,0.12111,0.18664,0.12284 +P76067,Candida albicans,II,Bloodstream,a/α,SPI,30,1.96451,1.08699,1.40001,0.48797,1.6566,0.86369 +P76067,Candida albicans,II,Bloodstream,a/α,LEE,30,-0.08998,0.07848,-0.06208,0.08878,-0.0773,0.08447 +P76067,Candida albicans,II,Bloodstream,a/α,LEE,37,-0.06589,0.06482,-0.14899,0.09736,-0.10744,0.09255 +P76067,Candida albicans,II,Bloodstream,a/α,YPD,37,0.13529,0.06662,0.12782,0.12149,0.13155,0.09805 +P76067,Candida albicans,II,Bloodstream,a/α,YPD,30,0.46645,0.09227,0.26357,0.13443,0.35579,0.1547 +P76067,Candida albicans,II,Bloodstream,a/α,SPI,37,0.48725,0.12839,0.37463,0.0877,0.43094,0.12353 +P78042,Candida albicans,III,Bloodstream,a/α,YPD,37,0.15053,0.10597,0.11878,0.19145,0.13465,0.15554 +P78042,Candida albicans,III,Bloodstream,a/α,LEE,30,-0.02409,0.06358,-0.06982,0.01683,-0.04696,0.05182 +P78042,Candida albicans,III,Bloodstream,a/α,SPI,37,0.36157,0.11721,0.31645,0.0139,0.33901,0.08645 +P78042,Candida albicans,III,Bloodstream,a/α,LEE,37,-0.08498,0.02669,-0.1091,0.02424,-0.09704,0.0282 +P78042,Candida albicans,III,Bloodstream,a/α,SPI,30,0.48766,0.13675,0.38665,0.0365,0.43716,0.1121 +P78042,Candida albicans,III,Bloodstream,a/α,YPD,30,0.16136,0.18463,0.20492,0.08911,0.18314,0.14659 +P78048,Candida albicans,I,Bloodstream,α/α,LEE,37,-0.2315,0.11715,-0.17935,0.13163,-0.20542,0.1273 +P78048,Candida albicans,I,Bloodstream,α/α,YPD,37,0.25629,0.21899,0.14078,0.0667,0.21008,0.18373 +P78048,Candida albicans,I,Bloodstream,α/α,YPD,30,0.06269,0.04443,0.06479,0.08043,0.06374,0.06498 +P78048,Candida albicans,I,Bloodstream,α/α,SPI,30,0.22606,0.10838,0.29909,0.08999,0.26257,0.10609 +P78048,Candida albicans,I,Bloodstream,α/α,SPI,37,0.28549,0.07521,0.24891,0.06627,0.2672,0.0732 +P78048,Candida albicans,I,Bloodstream,α/α,LEE,30,-0.04377,0.05186,-0.19432,0.22102,-0.11905,0.1773 +P87,Candida albicans,SA,Oral cavity,a/a,YPD,37,0.28004,0.29705,0.07121,0.22865,0.19651,0.29038 +P87,Candida albicans,SA,Oral cavity,a/a,YPD,30,0.0996,0.09517,0.1064,0.11316,0.103,0.10461 +P87,Candida albicans,SA,Oral cavity,a/a,LEE,30,-0.18624,0.26727,-0.10737,0.1309,-0.14681,0.2141 +P87,Candida albicans,SA,Oral cavity,a/a,SPI,30,0.1748,0.01382,0.20668,0.05681,0.19606,0.04941 +P87,Candida albicans,SA,Oral cavity,a/a,LEE,37,-0.24112,0.19811,-0.1087,0.06223,-0.17491,0.16107 +P87,Candida albicans,SA,Oral cavity,a/a,SPI,37,0.78745,0.32976,0.78296,0.27819,0.78521,0.30508 +P94015,Candida albicans,I,Bloodstream,a/a,SPI,30,0.94036,0.56363,1.02914,0.41858,0.98475,0.49841 +P94015,Candida albicans,I,Bloodstream,a/a,SPI,37,0.41015,0.29012,0.44398,0.20491,0.42707,0.25173 +P94015,Candida albicans,I,Bloodstream,a/a,LEE,30,-0.19419,0.28298,-0.19917,0.27956,-0.19668,0.28129 +P94015,Candida albicans,I,Bloodstream,a/a,YPD,30,0.14206,0.11834,0.074,0.20584,0.10803,0.1713 +P94015,Candida albicans,I,Bloodstream,a/a,LEE,37,-0.27706,0.28252,-0.0714,0.05421,-0.17423,0.22793 +P94015,Candida albicans,I,Bloodstream,a/a,YPD,37,0.0572,0.04868,-0.08802,0.11699,-0.01541,0.11532 +SC5314,Candida albicans,I,Bloodstream,a/α,YPD,30,0.28722,0.09674,0.18579,0.15501,0.23651,0.1388 +SC5314,Candida albicans,I,Bloodstream,a/α,YPD,37,-0.23334,0.14927,-0.00995,0.08179,-0.12164,0.1642 +SC5314,Candida albicans,I,Bloodstream,a/α,LEE,37,-0.11099,0.06829,-0.08615,0.00656,-0.09857,0.05007 +SC5314,Candida albicans,I,Bloodstream,a/α,LEE,30,-0.01106,0.08714,-0.09,0.01917,-0.05053,0.07442 +SC5314,Candida albicans,I,Bloodstream,a/α,SPI,37,0.67101,0.2304,0.50393,0.16271,0.58747,0.21624 +SC5314,Candida albicans,I,Bloodstream,a/α,SPI,30,0.5454,0.12933,0.47513,0.15885,0.51027,0.14905 +SC5314 X SC5314 Tetraploid,Candida albicans,Unassigned,Unknown,a/α,SPI,30,-,-,1.28226,0.48597,1.28226,0.48597 +SC5314 X SC5314 Tetraploid,Candida albicans,Unassigned,Unknown,a/α,LEE,30,-,-,-0.04144,0.03337,-0.04144,0.03337 +SC5314 X SC5314 Tetraploid,Candida albicans,Unassigned,Unknown,a/α,YPD,30,-,-,0.15073,0.05365,0.15073,0.05365 +SC5314 X SC5314 Tetraploid,Candida albicans,Unassigned,Unknown,a/α,LEE,37,-,-,-0.00447,0.03905,-0.00447,0.03905 +SC5314 X SC5314 Tetraploid,Candida albicans,Unassigned,Unknown,a/α,YPD,37,-,-,0.10756,0.11855,0.10756,0.11855 +SC5314 X SC5314 Tetraploid,Candida albicans,Unassigned,Unknown,a/α,SPI,37,-,-,0.67078,0.17697,0.67078,0.17697 +WO-1,Candida albicans,WO-1,Bloodstream,α/α,LEE,30,-0.03575,0.06478,-0.26474,0.38331,-0.15025,0.29778 +WO-1,Candida albicans,WO-1,Bloodstream,α/α,YPD,30,0.15643,0.00544,0.11431,0.09245,0.13537,0.06879 +WO-1,Candida albicans,WO-1,Bloodstream,α/α,SPI,37,1.22802,0.23879,0.71508,0.44828,0.97155,0.44132 +WO-1,Candida albicans,WO-1,Bloodstream,α/α,LEE,37,-0.38543,0.26521,-0.34904,0.30265,-0.36724,0.28513 +WO-1,Candida albicans,WO-1,Bloodstream,α/α,YPD,37,0.09713,0.0234,0.1322,0.09448,0.11466,0.07102 +WO-1,Candida albicans,WO-1,Bloodstream,α/α,SPI,30,1.36474,0.92771,0.43757,0.2214,0.90116,0.81838 diff --git a/Sorted_Files/invasion_scores_sorted.csv b/Sorted_Files/invasion_scores_sorted.csv new file mode 100644 index 0000000000000000000000000000000000000000..2564fc6c9fd4de30812232f84d4ff1e957275103 --- /dev/null +++ b/Sorted_Files/invasion_scores_sorted.csv @@ -0,0 +1,205 @@ +MAY Strain #,Species,Soll Clade,Isolation Site, MTL Genotype, Media,Temperature(°C),MJD Phenotype Score,MJD Score St. Dev.,RJF Phenotype Score,RJF Score St. Dev.,Total Average Phenotype Score,Total Phenotype Score St. Dev. +12C,Candida albicans,I,Oral cavity,a/a,LEE,37,0.02448,0.00746,0.02399,0.00652,0.02423,0.00701 +12C,Candida albicans,I,Oral cavity,a/a,YPD,37,0.68093,0.01071,0.61408,0.02662,0.64082,0.03929 +12C,Candida albicans,I,Oral cavity,a/a,LEE,30,0.03817,0.02733,0.02217,0.01603,0.03017,0.02379 +12C,Candida albicans,I,Oral cavity,a/a,SPI,37,0.40171,0.08558,0.48821,0.07159,0.44496,0.08997 +12C,Candida albicans,I,Oral cavity,a/a,YPD,30,0.78618,0.01644,0.73301,0.06967,0.7596,0.05717 +12C,Candida albicans,I,Oral cavity,a/a,SPI,30,0.82793,0.12708,0.61876,0.1542,0.72335,0.17579 +19F,Candida albicans,I,Vagina,α/α,YPD,37,0.10936,0.06266,0.11311,0.03415,0.11124,0.05049 +19F,Candida albicans,I,Vagina,α/α,LEE,30,0.04989,0.02389,0.01114,0.00204,0.03439,0.02654 +19F,Candida albicans,I,Vagina,α/α,LEE,37,0.03473,0.00956,0.01771,0.00462,0.02622,0.01135 +19F,Candida albicans,I,Vagina,α/α,SPI,30,0.06744,0.04867,0.03685,0.04141,0.05215,0.0477 +19F,Candida albicans,I,Vagina,α/α,YPD,30,0.26531,0.06375,0.245,0.03492,0.25515,0.05239 +19F,Candida albicans,I,Vagina,α/α,SPI,37,0.41642,0.02187,0.2746,0.146,0.34551,0.1262 +529L,Candida albicans,529L,Oral cavity,a/α,SPI,37,0.28098,0.04302,0.21823,0.04747,0.24961,0.0551 +529L,Candida albicans,529L,Oral cavity,a/α,YPD,30,0.49648,0.04984,0.43892,0.08436,0.4677,0.07502 +529L,Candida albicans,529L,Oral cavity,a/α,LEE,30,0.04886,0.00972,0.0588,0.01459,0.05383,0.01336 +529L,Candida albicans,529L,Oral cavity,a/α,YPD,37,0.52249,0.05964,0.48237,0.11294,0.50243,0.09252 +529L,Candida albicans,529L,Oral cavity,a/α,SPI,30,0.59825,0.16603,0.52675,0.00464,0.5625,0.12276 +529L,Candida albicans,529L,Oral cavity,a/α,LEE,37,0.581,0.09418,0.56779,0.04772,0.57439,0.07495 +C. dubliniensis,Candida dubliniensis,Unassigned,Unknown,Unknown,LEE,30,0.30654,0.02423,0.26392,0.04002,0.28523,0.03935 +C. dubliniensis,Candida dubliniensis,Unassigned,Unknown,Unknown,YPD,37,0.70757,0.02372,0.69363,0.06282,0.7006,0.04799 +C. dubliniensis,Candida dubliniensis,Unassigned,Unknown,Unknown,LEE,37,0.3895,0.0433,0.35357,0.0055,0.37153,0.03571 +C. dubliniensis,Candida dubliniensis,Unassigned,Unknown,Unknown,YPD,30,0.82251,0.01095,0.72593,0.05826,0.77422,0.06394 +C. dubliniensis,Candida dubliniensis,Unassigned,Unknown,Unknown,SPI,30,0.65342,0.02298,0.58308,0.02888,0.61825,0.0438 +C. dubliniensis,Candida dubliniensis,Unassigned,Unknown,Unknown,SPI,37,0.8021,0.053,0.80941,0.02359,0.80576,0.04118 +C. glabrata,Candida glabrata,Unassigned,Unknown,Unknown,SPI,30,0.4324,0.0,0.57498,0.0432,0.52745,0.07591 +C. glabrata,Candida glabrata,Unassigned,Unknown,Unknown,LEE,37,0.52634,0.15667,0.33724,0.13725,0.43179,0.17502 +C. glabrata,Candida glabrata,Unassigned,Unknown,Unknown,YPD,30,0.11168,0.02914,0.18742,0.07307,0.14955,0.06729 +C. glabrata,Candida glabrata,Unassigned,Unknown,Unknown,LEE,30,0.96266,0.05281,0.60765,0.04898,0.82065,0.18133 +C. glabrata,Candida glabrata,Unassigned,Unknown,Unknown,SPI,37,0.66593,0.19499,0.6084,0.00838,0.64292,0.15374 +C. glabrata,Candida glabrata,Unassigned,Unknown,Unknown,YPD,37,0.22189,0.02527,0.27282,0.02732,0.24735,0.03662 +C. guilliermondii,Candida guilliermondii,Unassigned,Unknown,Unknown,LEE,37,0.76823,0.26682,0.53362,0.22012,0.65093,0.27126 +C. guilliermondii,Candida guilliermondii,Unassigned,Unknown,Unknown,LEE,30,0.4684,0.08259,0.7152,0.20233,0.5918,0.19775 +C. guilliermondii,Candida guilliermondii,Unassigned,Unknown,Unknown,SPI,37,0.89338,0.07985,0.92412,0.10731,0.90875,0.09582 +C. guilliermondii,Candida guilliermondii,Unassigned,Unknown,Unknown,YPD,30,0.74607,0.01236,0.7721,0.08078,0.75908,0.05924 +C. guilliermondii,Candida guilliermondii,Unassigned,Unknown,Unknown,YPD,37,0.39222,0.15638,0.54297,0.08064,0.4676,0.14546 +C. guilliermondii,Candida guilliermondii,Unassigned,Unknown,Unknown,SPI,30,0.83338,0.0269,0.83411,0.05656,0.83374,0.04429 +C. lusitaniae,Candida lusitaniae,Unassigned,Unknown,Unknown,LEE,30,0.34941,0.27714,0.2975,0.14146,0.32346,0.22155 +C. lusitaniae,Candida lusitaniae,Unassigned,Unknown,Unknown,YPD,30,0.30342,0.1516,0.25767,0.14496,0.28055,0.15007 +C. lusitaniae,Candida lusitaniae,Unassigned,Unknown,Unknown,YPD,37,0.26549,0.06474,0.12356,0.07491,0.19452,0.09969 +C. lusitaniae,Candida lusitaniae,Unassigned,Unknown,Unknown,LEE,37,0.20683,0.04697,0.46655,0.36483,0.33669,0.29072 +C. lusitaniae,Candida lusitaniae,Unassigned,Unknown,Unknown,SPI,37,0.20345,0.1442,0.44617,0.0665,0.32481,0.16533 +C. lusitaniae,Candida lusitaniae,Unassigned,Unknown,Unknown,SPI,30,0.33783,0.01885,0.30857,0.03199,0.3232,0.03006 +C. metapsilosis,Candida metapsilosis,Unassigned,Unknown,Unknown,SPI,30,0.73181,0.02848,0.73173,0.01013,0.73177,0.02138 +C. metapsilosis,Candida metapsilosis,Unassigned,Unknown,Unknown,LEE,37,0.30029,0.1361,0.38609,0.03088,0.34319,0.1076 +C. metapsilosis,Candida metapsilosis,Unassigned,Unknown,Unknown,YPD,37,0.6468,0.03698,0.7179,0.03078,0.68235,0.0492 +C. metapsilosis,Candida metapsilosis,Unassigned,Unknown,Unknown,LEE,30,0.45833,0.12857,0.52345,0.04435,0.49089,0.10153 +C. metapsilosis,Candida metapsilosis,Unassigned,Unknown,Unknown,YPD,30,0.75226,0.01031,0.74619,0.06103,0.74923,0.04387 +C. metapsilosis,Candida metapsilosis,Unassigned,Unknown,Unknown,SPI,37,0.68147,0.02751,0.68035,0.02705,0.68091,0.02729 +C. orthopsilosis,Candida orthopsilosis,Unassigned,Unknown,Unknown,SPI,30,0.61617,0.09739,0.38426,0.04853,0.50021,0.13916 +C. orthopsilosis,Candida orthopsilosis,Unassigned,Unknown,Unknown,LEE,30,0.4454,0.13386,0.49556,0.03,0.47048,0.10019 +C. orthopsilosis,Candida orthopsilosis,Unassigned,Unknown,Unknown,YPD,37,0.32808,0.0111,0.35854,0.04361,0.34331,0.03527 +C. orthopsilosis,Candida orthopsilosis,Unassigned,Unknown,Unknown,SPI,37,0.41607,0.07054,0.33561,0.01638,0.37584,0.06512 +C. orthopsilosis,Candida orthopsilosis,Unassigned,Unknown,Unknown,YPD,30,0.61969,0.01844,0.64575,0.01332,0.63272,0.0207 +C. orthopsilosis,Candida orthopsilosis,Unassigned,Unknown,Unknown,LEE,37,0.43681,0.05087,0.35385,0.04936,0.39533,0.06506 +C. parapsilosis,Candida parapsilosis,Unassigned,Unknown,Unknown,YPD,37,0.94099,0.00204,0.94241,0.01137,0.9417,0.0082 +C. parapsilosis,Candida parapsilosis,Unassigned,Unknown,Unknown,LEE,30,0.97824,0.01053,0.92918,0.01622,0.95371,0.02808 +C. parapsilosis,Candida parapsilosis,Unassigned,Unknown,Unknown,SPI,37,0.99386,0.00868,0.96994,0.04252,0.9819,0.03293 +C. parapsilosis,Candida parapsilosis,Unassigned,Unknown,Unknown,LEE,37,0.99423,0.00472,0.94047,0.02992,0.96735,0.03437 +C. parapsilosis,Candida parapsilosis,Unassigned,Unknown,Unknown,SPI,30,0.69471,0.04214,0.71962,0.03157,0.70716,0.03926 +C. parapsilosis,Candida parapsilosis,Unassigned,Unknown,Unknown,YPD,30,0.86361,0.02547,0.88896,0.01773,0.87629,0.02534 +C. tropicalis,Candida tropicalis,Unassigned,Unknown,Unknown,YPD,30,1.0,0.0,0.98101,0.02685,0.99051,0.02123 +C. tropicalis,Candida tropicalis,Unassigned,Unknown,Unknown,LEE,37,0.8577,0.0748,0.89626,0.07652,0.87698,0.07808 +C. tropicalis,Candida tropicalis,Unassigned,Unknown,Unknown,YPD,37,0.99661,0.00479,0.97685,0.03275,0.98673,0.0254 +C. tropicalis,Candida tropicalis,Unassigned,Unknown,Unknown,LEE,30,0.86525,0.17011,0.87031,0.1834,0.86778,0.1769 +C. tropicalis,Candida tropicalis,Unassigned,Unknown,Unknown,SPI,30,0.99043,0.01061,0.93706,0.04452,0.96374,0.04195 +C. tropicalis,Candida tropicalis,Unassigned,Unknown,Unknown,SPI,37,0.93801,0.03327,0.9528,0.03439,0.9454,0.03463 +D. hansenii,Debaryomyces hansenii,Unassigned,Unknown,Unknown,SPI,30,0.67298,0.26699,0.28238,0.05961,0.47768,0.27488 +D. hansenii,Debaryomyces hansenii,Unassigned,Unknown,Unknown,LEE,30,0.58941,0.04569,0.50172,0.22797,0.54557,0.17015 +D. hansenii,Debaryomyces hansenii,Unassigned,Unknown,Unknown,LEE,37,0.93949,0.08557,1.0,0.0,0.96974,0.06765 +D. hansenii,Debaryomyces hansenii,Unassigned,Unknown,Unknown,SPI,37,0.7074,0.04797,1.0,0.0,0.8537,0.15018 +D. hansenii,Debaryomyces hansenii,Unassigned,Unknown,Unknown,YPD,30,0.12853,0.12021,0.02462,0.02123,0.07658,0.10075 +D. hansenii,Debaryomyces hansenii,Unassigned,Unknown,Unknown,YPD,37,0.48275,0.28576,1.0,0.0,0.74137,0.3282 +GC75,Candida albicans,SA,Oral cavity,a/α,SPI,37,0.15272,0.11125,0.14363,0.0057,0.14818,0.0789 +GC75,Candida albicans,SA,Oral cavity,a/α,YPD,37,0.49733,0.022,0.11014,0.04516,0.30373,0.19683 +GC75,Candida albicans,SA,Oral cavity,a/α,YPD,30,0.09882,0.06738,0.12243,0.04562,0.11062,0.05873 +GC75,Candida albicans,SA,Oral cavity,a/α,LEE,30,0.01802,0.02114,0.02085,0.02215,0.01944,0.0217 +GC75,Candida albicans,SA,Oral cavity,a/α,SPI,30,0.00625,0.00296,0.06599,0.03845,0.04209,0.0418 +GC75,Candida albicans,SA,Oral cavity,a/α,LEE,37,0.01331,0.00556,0.0187,0.00287,0.01601,0.00518 +L. elongisporus,Lodderomyces elongisporus,Unassigned,Unknown,Unknown,LEE,30,0.27258,0.0159,0.1907,0.07513,0.23164,0.06801 +L. elongisporus,Lodderomyces elongisporus,Unassigned,Unknown,Unknown,YPD,30,0.81034,0.01491,0.75941,0.04526,0.78487,0.04224 +L. elongisporus,Lodderomyces elongisporus,Unassigned,Unknown,Unknown,LEE,37,0.30374,0.17936,0.3205,0.17961,0.31212,0.17968 +L. elongisporus,Lodderomyces elongisporus,Unassigned,Unknown,Unknown,SPI,30,0.58887,0.03126,0.55456,0.01794,0.57171,0.03072 +L. elongisporus,Lodderomyces elongisporus,Unassigned,Unknown,Unknown,YPD,37,0.69281,0.0629,0.53376,0.25039,0.61329,0.19913 +L. elongisporus,Lodderomyces elongisporus,Unassigned,Unknown,Unknown,SPI,37,0.34746,0.02037,0.42371,0.09529,0.38559,0.07875 +L26,Candida albicans,I,Vagina,a/a,LEE,30,0.03355,0.02283,0.0491,0.0359,0.04132,0.03107 +L26,Candida albicans,I,Vagina,a/a,LEE,37,0.03704,0.03129,0.01949,0.00864,0.02827,0.02458 +L26,Candida albicans,I,Vagina,a/a,YPD,30,0.67327,0.10005,0.65267,0.04901,0.66297,0.07945 +L26,Candida albicans,I,Vagina,a/a,SPI,30,0.26736,0.11858,0.23906,0.0644,0.25321,0.09646 +L26,Candida albicans,I,Vagina,a/a,YPD,37,0.67622,0.064,0.72153,0.02386,0.69887,0.05334 +L26,Candida albicans,I,Vagina,a/a,SPI,37,0.24988,0.037,0.23664,0.06438,0.24194,0.05546 +P34048,Candida albicans,III,Bloodstream,a/α,LEE,30,0.14195,0.08182,0.11547,0.08178,0.12871,0.08287 +P34048,Candida albicans,III,Bloodstream,a/α,SPI,37,0.26382,0.07863,0.20863,0.14597,0.23622,0.12044 +P34048,Candida albicans,III,Bloodstream,a/α,SPI,30,0.09094,0.08502,0.09485,0.08103,0.0929,0.08308 +P34048,Candida albicans,III,Bloodstream,a/α,LEE,37,0.07275,0.04506,0.07182,0.06726,0.07229,0.05725 +P34048,Candida albicans,III,Bloodstream,a/α,YPD,37,0.55893,0.06283,0.30529,0.13371,0.42058,0.16582 +P34048,Candida albicans,III,Bloodstream,a/α,YPD,30,0.3699,0.06271,0.24104,0.14096,0.30547,0.1267 +P37005,Candida albicans,I,Oral cavity,a/a,SPI,37,0.2094,0.16055,0.20993,0.09116,0.20972,0.12368 +P37005,Candida albicans,I,Oral cavity,a/a,YPD,30,0.33445,0.07006,0.51052,0.05803,0.42248,0.10903 +P37005,Candida albicans,I,Oral cavity,a/a,SPI,30,0.38957,0.22116,0.14755,0.07015,0.26856,0.20386 +P37005,Candida albicans,I,Oral cavity,a/a,LEE,37,0.07893,0.02843,0.03387,0.01011,0.0564,0.03103 +P37005,Candida albicans,I,Oral cavity,a/a,YPD,37,0.42005,0.05842,0.40877,0.08216,0.41441,0.07151 +P37005,Candida albicans,I,Oral cavity,a/a,LEE,30,0.0331,0.00741,0.03436,0.0114,0.03373,0.00964 +P37037,Candida albicans,I,Oral cavity,a/α,YPD,37,0.2383,0.22991,0.3949,0.11151,0.3166,0.19692 +P37037,Candida albicans,I,Oral cavity,a/α,SPI,30,0.39665,0.29413,0.08097,0.06118,0.23881,0.26465 +P37037,Candida albicans,I,Oral cavity,a/α,YPD,30,0.45832,0.13866,0.242,0.16268,0.35016,0.18586 +P37037,Candida albicans,I,Oral cavity,a/α,LEE,30,0.15982,0.08804,0.07127,0.02823,0.11554,0.07896 +P37037,Candida albicans,I,Oral cavity,a/α,LEE,37,0.09021,0.04888,0.04174,0.00472,0.06598,0.04234 +P37037,Candida albicans,I,Oral cavity,a/α,SPI,37,0.24209,0.213,0.06532,0.04082,0.15371,0.177 +P37039,Candida albicans,I,Bloodstream,a/α,YPD,37,0.36433,0.14421,0.25377,0.08006,0.30905,0.12907 +P37039,Candida albicans,I,Bloodstream,a/α,LEE,37,0.02903,0.01205,0.02618,0.0139,0.0276,0.01308 +P37039,Candida albicans,I,Bloodstream,a/α,SPI,30,0.31517,0.16455,0.19525,0.11266,0.25521,0.15323 +P37039,Candida albicans,I,Bloodstream,a/α,SPI,37,0.3642,0.08498,0.4672,0.1238,0.4157,0.11801 +P37039,Candida albicans,I,Bloodstream,a/α,LEE,30,0.02077,0.00909,0.05373,0.04047,0.03725,0.03364 +P37039,Candida albicans,I,Bloodstream,a/α,YPD,30,0.27806,0.07975,0.19083,0.09499,0.23444,0.09795 +P57055,Candida albicans,III,Bloodstream,a/α,LEE,37,0.01867,0.01278,0.05101,0.04916,0.03484,0.03939 +P57055,Candida albicans,III,Bloodstream,a/α,YPD,30,0.46581,0.11926,0.50242,0.14036,0.48412,0.13152 +P57055,Candida albicans,III,Bloodstream,a/α,LEE,30,0.02837,0.01308,0.08544,0.10099,0.0569,0.07746 +P57055,Candida albicans,III,Bloodstream,a/α,SPI,30,0.16614,0.06825,0.1057,0.10104,0.13592,0.09137 +P57055,Candida albicans,III,Bloodstream,a/α,SPI,37,0.19619,0.05391,0.14958,0.08527,0.17289,0.07504 +P57055,Candida albicans,III,Bloodstream,a/α,YPD,37,0.49469,0.07462,0.40608,0.15895,0.45039,0.13183 +P57072,Candida albicans,II,Bloodstream,α/α,YPD,37,0.64694,0.12155,0.5825,0.10295,0.61472,0.11715 +P57072,Candida albicans,II,Bloodstream,α/α,LEE,30,0.38247,0.29736,0.5065,0.47115,0.44449,0.39881 +P57072,Candida albicans,II,Bloodstream,α/α,SPI,30,0.48708,0.30079,0.49774,0.22524,0.49241,0.26577 +P57072,Candida albicans,II,Bloodstream,α/α,YPD,30,0.51701,0.03141,0.42434,0.14905,0.47068,0.11725 +P57072,Candida albicans,II,Bloodstream,α/α,SPI,37,0.05232,0.03199,0.06933,0.01465,0.06082,0.02629 +P57072,Candida albicans,II,Bloodstream,α/α,LEE,37,0.43145,0.33746,0.23659,0.21148,0.33402,0.29798 +P60002,Candida albicans,SA,Bloodstream,a/a,LEE,37,0.01832,0.00821,0.02884,0.01897,0.02358,0.01553 +P60002,Candida albicans,SA,Bloodstream,a/a,SPI,37,0.53897,0.08691,0.48224,0.20257,0.5106,0.15842 +P60002,Candida albicans,SA,Bloodstream,a/a,YPD,30,0.5149,0.37242,0.42545,0.28168,0.47018,0.3332 +P60002,Candida albicans,SA,Bloodstream,a/a,SPI,30,0.67841,0.31215,0.35775,0.30709,0.51808,0.34868 +P60002,Candida albicans,SA,Bloodstream,a/a,LEE,30,0.10975,0.06659,0.08957,0.07167,0.09966,0.06991 +P60002,Candida albicans,SA,Bloodstream,a/a,YPD,37,0.44121,0.26979,0.36421,0.22243,0.40271,0.25023 +P75010,Candida albicans,E,Bloodstream,a/α,LEE,30,0.03914,0.04533,0.02354,0.01732,0.03134,0.03519 +P75010,Candida albicans,E,Bloodstream,a/α,SPI,37,0.33646,0.14253,0.36342,0.09994,0.34994,0.12383 +P75010,Candida albicans,E,Bloodstream,a/α,LEE,37,0.01344,0.0052,0.01703,0.01834,0.01523,0.0136 +P75010,Candida albicans,E,Bloodstream,a/α,YPD,30,0.68989,0.13151,0.7232,0.1498,0.70655,0.14193 +P75010,Candida albicans,E,Bloodstream,a/α,SPI,30,0.35418,0.1657,0.4791,0.10519,0.41664,0.15219 +P75010,Candida albicans,E,Bloodstream,a/α,YPD,37,0.62849,0.03307,0.6783,0.12799,0.6534,0.09674 +P75016,Candida albicans,SA,Bloodstream,a/α,LEE,37,0.06993,0.07992,0.1406,0.10665,0.10527,0.10065 +P75016,Candida albicans,SA,Bloodstream,a/α,LEE,30,0.0863,0.09679,0.11996,0.0915,0.10313,0.09568 +P75016,Candida albicans,SA,Bloodstream,a/α,SPI,30,0.76282,0.24459,0.57969,0.19947,0.67125,0.24123 +P75016,Candida albicans,SA,Bloodstream,a/α,YPD,30,0.61974,0.05117,0.42325,0.20437,0.52149,0.17845 +P75016,Candida albicans,SA,Bloodstream,a/α,SPI,37,0.65615,0.05019,0.62589,0.10369,0.64102,0.08285 +P75016,Candida albicans,SA,Bloodstream,a/α,YPD,37,0.45649,0.08838,0.32538,0.23858,0.39094,0.19148 +P75063,Candida albicans,SA,Bloodstream,α/-,LEE,30,0.03202,0.01924,0.02276,0.0048,0.02739,0.01476 +P75063,Candida albicans,SA,Bloodstream,α/-,LEE,37,0.05132,0.02707,0.01624,0.00282,0.03378,0.02604 +P75063,Candida albicans,SA,Bloodstream,α/-,SPI,30,0.17878,0.10697,0.08416,0.06652,0.13147,0.10086 +P75063,Candida albicans,SA,Bloodstream,α/-,YPD,30,0.25119,0.01975,0.38456,0.06049,0.31787,0.08044 +P75063,Candida albicans,SA,Bloodstream,α/-,YPD,37,0.48191,0.0287,0.48663,0.04877,0.48427,0.04008 +P75063,Candida albicans,SA,Bloodstream,α/-,SPI,37,0.33137,0.06543,0.11373,0.03314,0.22255,0.12055 +P76055,Candida albicans,II,Bloodstream,a/α,LEE,30,0.035,0.0186,0.02647,0.01219,0.03073,0.01629 +P76055,Candida albicans,II,Bloodstream,a/α,YPD,30,0.46279,0.0582,0.26596,0.09603,0.36437,0.12645 +P76055,Candida albicans,II,Bloodstream,a/α,YPD,37,0.40027,0.02888,0.22052,0.05256,0.31039,0.09938 +P76055,Candida albicans,II,Bloodstream,a/α,SPI,37,0.43061,0.00815,0.36724,0.03353,0.39259,0.0408 +P76055,Candida albicans,II,Bloodstream,a/α,LEE,37,0.0157,0.00509,0.00951,0.00289,0.0126,0.00517 +P76055,Candida albicans,II,Bloodstream,a/α,SPI,30,0.07854,0.03972,0.0704,0.04567,0.07447,0.04299 +P76067,Candida albicans,II,Bloodstream,a/α,LEE,37,0.06724,0.0615,0.14745,0.17078,0.10734,0.13447 +P76067,Candida albicans,II,Bloodstream,a/α,SPI,37,0.78181,0.09756,0.8426,0.07051,0.8122,0.09038 +P76067,Candida albicans,II,Bloodstream,a/α,LEE,30,0.08479,0.08607,0.05899,0.03141,0.07189,0.06605 +P76067,Candida albicans,II,Bloodstream,a/α,YPD,30,1.0,0.0,0.98663,0.0299,0.99271,0.02307 +P76067,Candida albicans,II,Bloodstream,a/α,YPD,37,0.98119,0.01927,0.9075,0.07531,0.94435,0.06617 +P76067,Candida albicans,II,Bloodstream,a/α,SPI,30,0.97471,0.03686,0.99599,0.00896,0.98632,0.02782 +P78042,Candida albicans,III,Bloodstream,a/α,SPI,30,0.99913,0.00123,0.52207,0.16914,0.7606,0.26684 +P78042,Candida albicans,III,Bloodstream,a/α,LEE,30,0.03552,0.0203,0.01921,0.00289,0.02737,0.01663 +P78042,Candida albicans,III,Bloodstream,a/α,LEE,37,0.01518,0.00666,0.01649,0.00089,0.01583,0.0048 +P78042,Candida albicans,III,Bloodstream,a/α,SPI,37,0.56305,0.0685,0.42333,0.0852,0.49319,0.1042 +P78042,Candida albicans,III,Bloodstream,a/α,YPD,37,0.72383,0.0552,0.56955,0.07314,0.64669,0.10074 +P78042,Candida albicans,III,Bloodstream,a/α,YPD,30,0.87304,0.06833,0.72027,0.06147,0.79665,0.10029 +P78048,Candida albicans,I,Bloodstream,α/α,YPD,37,0.22056,0.1053,0.13292,0.07596,0.17674,0.10173 +P78048,Candida albicans,I,Bloodstream,α/α,LEE,30,0.07652,0.06388,0.05592,0.02566,0.06622,0.04975 +P78048,Candida albicans,I,Bloodstream,α/α,YPD,30,0.43189,0.09024,0.42998,0.08187,0.43094,0.08616 +P78048,Candida albicans,I,Bloodstream,α/α,SPI,37,0.20943,0.11239,0.23981,0.06562,0.22462,0.09327 +P78048,Candida albicans,I,Bloodstream,α/α,SPI,30,0.30174,0.0561,0.40948,0.13845,0.36639,0.12468 +P78048,Candida albicans,I,Bloodstream,α/α,LEE,37,0.38843,0.37503,0.21575,0.23362,0.30209,0.32414 +P87,Candida albicans,SA,Oral cavity,a/a,LEE,30,0.0844,0.05966,0.06683,0.05509,0.07561,0.05809 +P87,Candida albicans,SA,Oral cavity,a/a,YPD,37,0.88483,0.11788,0.82153,0.1236,0.85318,0.12485 +P87,Candida albicans,SA,Oral cavity,a/a,YPD,30,0.46065,0.26402,0.36627,0.22954,0.41346,0.25184 +P87,Candida albicans,SA,Oral cavity,a/a,SPI,37,0.82561,0.16137,0.83463,0.0373,0.83012,0.1172 +P87,Candida albicans,SA,Oral cavity,a/a,SPI,30,0.0666,0.04775,0.08923,0.0459,0.07792,0.04818 +P87,Candida albicans,SA,Oral cavity,a/a,LEE,37,0.13366,0.10189,0.221,0.22164,0.17733,0.17793 +P94015,Candida albicans,I,Bloodstream,a/a,YPD,30,0.49668,0.11005,0.64057,0.31092,0.56862,0.24406 +P94015,Candida albicans,I,Bloodstream,a/a,YPD,37,0.37129,0.08841,0.3182,0.09442,0.34233,0.09547 +P94015,Candida albicans,I,Bloodstream,a/a,LEE,37,0.38109,0.17592,0.3918,0.20351,0.38644,0.19029 +P94015,Candida albicans,I,Bloodstream,a/a,SPI,37,0.59941,0.28423,0.59199,0.18482,0.5957,0.23976 +P94015,Candida albicans,I,Bloodstream,a/a,SPI,30,0.73761,0.09084,0.86549,0.13464,0.80155,0.13144 +P94015,Candida albicans,I,Bloodstream,a/a,LEE,30,0.61161,0.19176,0.69291,0.15635,0.65226,0.17962 +SC5314,Candida albicans,I,Bloodstream,a/α,SPI,37,0.65525,0.03979,0.61975,0.0301,0.6375,0.03949 +SC5314,Candida albicans,I,Bloodstream,a/α,LEE,30,0.18746,0.20959,0.25806,0.31553,0.22276,0.27017 +SC5314,Candida albicans,I,Bloodstream,a/α,YPD,37,0.9248,0.01514,0.82914,0.12286,0.87697,0.09975 +SC5314,Candida albicans,I,Bloodstream,a/α,LEE,37,0.74106,0.08601,0.77784,0.21525,0.75945,0.16494 +SC5314,Candida albicans,I,Bloodstream,a/α,YPD,30,1.0,0.0,1.0,0.0,1.0,0.0 +SC5314,Candida albicans,I,Bloodstream,a/α,SPI,30,0.92653,0.07311,0.88006,0.05069,0.9033,0.06706 +SC5314 X SC5314 Tetraploid,Candida albicans,Unassigned,Unknown,a/α,LEE,37,-,-,1.0,0.0,1.0,0.0 +SC5314 X SC5314 Tetraploid,Candida albicans,Unassigned,Unknown,a/α,YPD,30,-,-,0.9317,0.06887,0.9317,0.06887 +SC5314 X SC5314 Tetraploid,Candida albicans,Unassigned,Unknown,a/α,SPI,30,-,-,1.0,0.0,1.0,0.0 +SC5314 X SC5314 Tetraploid,Candida albicans,Unassigned,Unknown,a/α,SPI,37,-,-,0.82,0.05612,0.82,0.05612 +SC5314 X SC5314 Tetraploid,Candida albicans,Unassigned,Unknown,a/α,LEE,30,-,-,0.19679,0.05523,0.19679,0.05523 +SC5314 X SC5314 Tetraploid,Candida albicans,Unassigned,Unknown,a/α,YPD,37,-,-,0.92551,0.01533,0.92551,0.01533 +WO-1,Candida albicans,WO-1,Bloodstream,α/α,SPI,30,0.47941,0.04806,0.44671,0.05691,0.46306,0.05515 +WO-1,Candida albicans,WO-1,Bloodstream,α/α,SPI,37,0.43027,0.05191,0.36889,0.06242,0.39958,0.06509 +WO-1,Candida albicans,WO-1,Bloodstream,α/α,LEE,37,0.0854,0.00865,0.09276,0.02846,0.08908,0.02135 +WO-1,Candida albicans,WO-1,Bloodstream,α/α,LEE,30,0.10327,0.05274,0.21018,0.06962,0.15672,0.08168 +WO-1,Candida albicans,WO-1,Bloodstream,α/α,YPD,30,0.71322,0.05879,0.52849,0.0471,0.62085,0.10662 +WO-1,Candida albicans,WO-1,Bloodstream,α/α,YPD,37,0.56838,0.05006,0.35209,0.05282,0.46024,0.11976 diff --git a/additive_correlations.csv b/additive_correlations.csv index 7b5a69783fcd7078f7c572c6148c80396dc2b989..f8cb721fc5c5752b7b8ef4bd087576c235a134e2 100644 --- a/additive_correlations.csv +++ b/additive_correlations.csv @@ -1,7 +1,7 @@ -"Media","Temperature(°C)","Adhesion Pearson Statistic","Adhesion P-value","Filamentation Pearson Statistic","Filamentation P-value","Invasion Pearson Statistic","Invasion P-value","Adh. + Fil. Pearson Statistic","Adh. + Fil. P-value","Adh. + Inv. Pearson Statistic","Adh. + Inv. P-value","Fil. + Inv. Pearson Statistic","Fil. + Inv. P-value","Adh. + Fil. + Inv. Pearson Statistic","Adh. + Fil. + Inv. P-value" -"LEE","30","-1.25016287101517","0.224992461286585","-0.207243834094401","0.837815880814208","-0.706141723587309","0.487860936567474","-1.01955033214067","0.319544593487795","-1.00860222054796","0.324646373820887","-0.718953443190146","0.480093974695464","-1.06860049184066","0.297380018574805" -"LEE","37","2.45954085389506","0.0226704726604204","0.480277032992017","0.635995473365843","2.51115659055467","0.0202830422795272","1.85119392146459","0.0782577186354199","2.87852323322219","0.00899114701841621","1.93346734137877","0.0667725169091707","2.52329342970287","0.0197568540413681" -"SPI","30","-0.516940171399622","0.610599801630142","-1.49645753678255","0.149413542849774","-0.867243634891197","0.395610433603792","-1.06936374854033","0.297044038550212","-0.76134349614126","0.454917296954279","-1.24973644633469","0.225145145329053","-1.05146543939314","0.304994525896292" -"SPI","37","2.05011972367224","0.0530443851695684","0.566624643850994","0.576975754476763","2.43912710706865","0.0236850076580968","1.48087892979267","0.153487620828728","2.6285717593594","0.0157003241550514","1.83046253248039","0.0814110075732709","2.14262553510982","0.0440164751028548" -"YPD","30","-1.10030182522826","0.283654024886279","1.28314352316422","0.213422503084265","1.16094353017772","0.258692214127873","0.0768972727468174","0.939433203222128","-0.0161548158873173","0.987263383826116","1.37355922449991","0.184065757202811","0.708750323800643","0.486273626156987" -"YPD","37","-2.09862136324188","0.0481221781344565","-1.24779631599426","0.225840823438716","0.175862236935268","0.862086966608244","-2.85524081355217","0.00947636153292339","-1.2398243569074","0.228716631262432","-0.671956918543493","0.5089369791254","-1.94280674405923","0.065567621722181" +"Media","Temperature(°C)","Adhesion Pearson Statistic","Adhesion P-value","Adhesion DoF","Filamentation Pearson Statistic","Filamentation DoF","Filamentation P-value","Invasion Pearson Statistic","Invasion DoF","Invasion P-value","Adh. + Fil. Pearson Statistic","Adh. + Fil. DoF","Adh. + Fil. P-value","Adh. + Inv. Pearson Statistic","Adh. + Inv. DoF","Adh. + Inv. P-value","Fil. + Inv. Pearson Statistic","Fil. + Inv. DoF","Fil. + Inv. P-value","Adh. + Fil. + Inv. Pearson Statistic","Adh. + FIl. + Inv. DoF","Adh. + Fil. + Inv. P-value" +"LEE","30","-1.25016287101517","21","0.224992461286585","-0.207243834094401","21","0.837815880814208","-0.706141723587309","21","0.487860936567474","-1.01955033214067","21","0.319544593487795","-1.00860222054796","21","0.324646373820887","-0.718953443190146","21","0.480093974695464","-1.06860049184066","21","0.297380018574805" +"LEE","37","2.45954085389506","21","0.0226704726604204","0.480277032992017","21","0.635995473365843","2.51115659055467","21","0.0202830422795272","1.85119392146459","21","0.0782577186354199","2.87852323322219","21","0.00899114701841621","1.93346734137877","21","0.0667725169091707","2.52329342970287","21","0.0197568540413681" +"SPI","30","-0.516940171399622","21","0.610599801630142","-1.49645753678255","21","0.149413542849774","-0.867243634891197","21","0.395610433603792","-1.06936374854033","21","0.297044038550212","-0.76134349614126","21","0.454917296954279","-1.24973644633469","21","0.225145145329053","-1.05146543939314","21","0.304994525896292" +"SPI","37","2.05011972367224","21","0.0530443851695684","0.566624643850994","21","0.576975754476763","2.43912710706865","21","0.0236850076580968","1.48087892979267","21","0.153487620828728","2.6285717593594","21","0.0157003241550514","1.83046253248039","21","0.0814110075732709","2.14262553510982","21","0.0440164751028548" +"YPD","30","-1.10030182522826","21","0.283654024886279","1.28314352316422","21","0.213422503084265","1.16094353017772","21","0.258692214127873","0.0768972727468174","21","0.939433203222128","-0.0161548158873173","21","0.987263383826116","1.37355922449991","21","0.184065757202811","0.708750323800643","21","0.486273626156987" +"YPD","37","-2.09862136324188","21","0.0481221781344565","-1.24779631599426","21","0.225840823438716","0.175862236935268","21","0.862086966608244","-2.85524081355217","21","0.00947636153292339","-1.2398243569074","21","0.228716631262432","-0.671956918543493","21","0.5089369791254","-1.94280674405923","21","0.065567621722181" diff --git a/additive_correlator.R b/additive_correlator.R index 30dc21ce3d11963f347806a17376b8ba4c19b1ab..ac7e9def7f8cf6fed70390e0316eec3eb9eb98a9 100644 --- a/additive_correlator.R +++ b/additive_correlator.R @@ -5,7 +5,7 @@ temps = c( "30", "37" ) data <- as.data.frame(read.csv( "compiled_and_combination_scores_data.csv" )) new_file_name <- "additive_correlations.csv" -header = c("Media", "Temperature(°C)", "Adhesion Pearson Statistic", "Adhesion P-value", "Filamentation Pearson Statistic", "Filamentation P-value", "Invasion Pearson Statistic", "Invasion P-value", "Adh. + Fil. Pearson Statistic", "Adh. + Fil. P-value", "Adh. + Inv. Pearson Statistic", "Adh. + Inv. P-value", "Fil. + Inv. Pearson Statistic", "Fil. + Inv. P-value", "Adh. + Fil. + Inv. Pearson Statistic", "Adh. + Fil. + Inv. P-value") +header = c("Media", "Temperature(°C)", "Adhesion Pearson Statistic", "Adhesion DoF", "Adhesion P-value", "Filamentation Pearson Statistic", "Filamentation DoF", "Filamentation P-value", "Invasion Pearson Statistic", "Invasion DoF", "Invasion P-value", "Adh. + Fil. Pearson Statistic", "Adh. + Fil. DoF", "Adh. + Fil. P-value", "Adh. + Inv. Pearson Statistic", "Adh. + Inv. DoF", "Adh. + Inv. P-value", "Fil. + Inv. Pearson Statistic", "Fil. + Inv. DoF", "Fil. + Inv. P-value", "Adh. + Fil. + Inv. Pearson Statistic", "Adh. + FIl. + Inv. DoF", "Adh. + Fil. + Inv. P-value") write.table( t(header), new_file_name, sep = ",", col.names = FALSE, row.names = FALSE, append = FALSE ) @@ -27,7 +27,7 @@ for ( medium in media ){ fil_inv.corr <- cor.test(d$fil_inv, d$Biofilm.norm, method = c("pearson")) all_sum.corr <- cor.test(d$all_sum, d$Biofilm.norm, method = c("pearson")) - line <- c( adh.corr$statistic, adh.corr$p.value, fil.corr$statistic, fil.corr$p.value, inv.corr$statistic, inv.corr$p.value, adh_fil.corr$statistic, adh_fil.corr$p.value, adh_inv.corr$statistic, adh_inv.corr$p.value, fil_inv.corr$statistic, fil_inv.corr$p.value, all_sum.corr$statistic, all_sum.corr$p.value) + line <- c( adh.corr$statistic, adh.corr$parameter, adh.corr$p.value, fil.corr$statistic, inv.corr$parameter, fil.corr$p.value, inv.corr$statistic, inv.corr$parameter, inv.corr$p.value, adh_fil.corr$statistic, adh_fil.corr$parameter, adh_fil.corr$p.value, adh_inv.corr$statistic, adh_inv.corr$parameter, adh_inv.corr$p.value, fil_inv.corr$statistic, fil_inv.corr$parameter, fil_inv.corr$p.value, all_sum.corr$statistic, all_sum.corr$parameter, all_sum.corr$p.value) printable <- c(medium, temp, line) write.table( t(printable), new_file_name, sep = ",", col.names = !file.exists(new_file_name), row.names = FALSE, append = TRUE )